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Clarity and clarity max

Manufactured by Bio-Rad
Sourced in United States

Clarity and Clarity Max are advanced imaging systems designed for sensitive and quantitative detection of proteins and nucleic acids in blotting applications. These systems utilize high-resolution cameras and specialized imaging software to capture and analyze data from various detection methods, including chemiluminescence, fluorescence, and colorimetric.

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3 protocols using clarity and clarity max

1

Western Blot Analysis of Mitophagy Markers

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Cell lysates were prepared in RIPA buffer plus proteinase inhibitors. Samples containing (20 µg) were separated by 10–15% SDS-PAGE, transferred to nitrocellulose membranes, blocked in 5% nonfat milk for 1h at RT and incubated overnight at 4 °C with the primary antibodies: MFN2 (H-68, Santa Cruz, sc-50331, dilution 1:1000, rabbit); Optineurin (C-2, Santa Cruz, sc-166576, dilution 1:1000, mouse); PINK1 (BC100-494, Novus Biologicals, dilution 1:2000, rabbit); Parkin (PRK8, ab77924, Abcam, dilution 1:2000, mouse); β-Actin (Sigma-Aldrich, A3854, dilution 1:40,000 conjugated to HRP). Secondary antibody incubation was performed for 1 h at RT using anti-mouse (m-IgGκ BP-HRP sc-516102, Santa Cruz, 1:10,000) and anti-rabbit (goat anti-rabbit IgG-HRP sc-2054, Santa Cruz, 1:10,000). Proteins were detected using ECL western blotting substrate (Pierce, Waltham, MA, USA), Clarity and Clarity Max (Bio-Rad, Hercules, CA, USA) and ChemiDoc Imaging System (Bio-Rad).
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2

Measuring Protein Accumulation in Nb Plants

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To test protein accumulation in Nb plants, three 8-mm leaf disks were harvested per sample at 2 dpi and ground in liquid nitrogen. Ground tissue was dissolved in 8-M urea buffer, vortexed for 10 min at RT, and centrifuged at 16,000g for 10 min (Ma et al., 2020) . Total protein extracts were resolved on a 10% sodium dodecyl sulfate polyacrylamide gel and subsequently transferred onto a nitrocellulose membrane using the wet transfer method. Tagged proteins in total protein or after affinity purification (see above) were detected using α-GFP antibodies (Merck; 11814460001) in a 1:5,000 dilution (1× TBST, 2% milk (w/v), 0.01% (w/v) NaAz), followed by incubation with HRP-conjugated secondary antibodies (Merck; A9044). Signal was detected by incubation of the membrane with Clarity and Clarity Max substrates (BioRad, Hercules, CA, USA; 1705061 and 1705062) using a ChemiDoc (BioRad). Membranes were stained with Ponceau S for loading control (Merck; 09276-6X1EA-F).
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3

Protein Accumulation Analysis in Tobacco

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To test protein accumulation after A. tumefaciens infiltrations in tobacco plants, three 8 mm leaf disks were harvested per protein combination at 2 dpi and ground in liquid nitrogen. Ground tissue was dissolved in 8 M Urea buffer, vortexed for 10 min at RT and centrifuged at 16,000 xg for 10 min (Ma et al., 2020) . Total protein extracts were resolved on a 10 % SDS-PAGE gel and subsequently transferred onto a nitrocellulose membrane using the wet transfer method. Tagged proteins were detected using primary antibodies (list antibodies) in a 1:5000 dilution (1x TBST-T, 2 % milk (w/v), 0.01 % (w/v) NaAz), followed by incubation with HRP-conjugated secondary antibodies. Signal was detected by incubation of the membrane with Clarity and Clarity Max substrates (BioRad) using a ChemiDoc (BioRad). Membranes were stained with Ponceau S as loading control.
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