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5 protocols using anti nf b p65

1

Aortic Protein Expression Profiling

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For immunoblotting, protein extracts (15 µg) from the thoracic aorta or total cellular proteins (50 µg) were electrophoresed on 10% SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were blocked with 5% dry milk in PBS-Tween buffer (0.1% Tween 20; pH 7.5) for 60 min and incubated with mouse monoclonal anti-GAPDH (TA-08, Zhongqian Jinqiao, 1/2000), rabbit anti-LOX-1 (alias: OLR1, 11837-1-ap, Proteintech, 1/1000), rabbit anti-NOX4 (Millipore, Billerica, MA, USA, 1/2000), rabbit polyclonal anti-NFĸB p65 (Santa Cruz Biotechnology, CA, USA, 1/1000); horseradish peroxidase-labeled goat anti-mouse IgG (H + L) (ZB-2305, Zhongshan Jinqiao, 1/2000), horseradish peroxidase-labeled goat anti-rabbit IgG (H + L) (ZB-2301, Zhongqian Jinqiao, 1/2000). The immunoreactive bands were detected by an enhanced chemiluminescence system (Millipore, Billerica, USA). Related signals were quantified using Scion Image Software (Scion Corp., Frederick, USA).
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2

Histological and Immunohistochemical Analysis

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The fixed tissue samples were rinsed down in tap water for 10 min, dehydrated in ascending grades of ethyl alcohol, and cleared in xylene. After that, they were immersed in molten paraffin at 58–62 °C. About 5 µm histological sections were made and stained with hematoxylin and eosin. The slides were ready to examine under a bright-field microscope.
The immunohistochemical staining technique was performed by Khalil et al. [56 (link)]. Sections were dewaxed and set in a 0.05 M citrate buffer, pH 6.8 solution for antigen retrieval. Next, these sections were placed in a 0.3% H2O2 solution for the deactivation of endogenous peroxides followed by protein blocking. Then, sections were incubated with an anti-LC3B antibody, an autophagosome marker (cat No. ab48394, Abcam, CA, USA), and anti-NF-ĸB/P65 (cat No. sc-8008, Santa Cruz, CA, USA) at a dilution rate of 1:100. The slides were then incubated with secondary goat anti-rabbit antibody (cat No. K4003, EnVision+TM System HRP polymer; Dako, Japan) for polyclonal antibodies for 30 min at room temperature following phosphate buffered saline rinse. Slides were then covered with a drop of DAB kit solution and eventually counterstained with Mayer’s hematoxylin. The staining labeling indices of the antibodies were presented as the mean of the percent of positive area/mm2.
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Immunohistochemical Analysis of Testicular Cells

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The immunohistochemical staining procedures are detailed in the study conducted (Khalil et al., 2020 ) which consisted of several sequential steps. The first step involved dewaxing the sections before their exposure to 0.05 M citrate buffer (pH 6.8), which was necessary for antigen retrieval. The next step involved treating the sections with protein block and 0.3% H2O2 to mitigate nonspecific binding. Afterward, the sections underwent incubation with anti-NF-ĸB P65 (Santa Cruz, Cat# (F-6): sc-8008), diluted 1/100, caspase 3 antibodies (Invitrogen, Cat# PA5-77887), diluted 1/100, in addition to PCNA Polyclonal rabbit Dako, USA, PA5-32541 at a dilution of 1/100. After rinsing the tissue sections with phosphate-buffered saline, they were exposed to a goat anti-rabbit secondary antibody (Cat# K4003, Envision+™ System Horseradish Peroxidase Labeled Polymer; Dako) for 30 minutes at ambient temperature to detect polyclonal antibodies. Next, we used Mayer’s hematoxylin and the DAB kit to observe the sections. To represent the proportion of cells that exhibited positive results for the antibodies, staining labeling indices were determined out of 1,000 testicular spermatogenic cells.
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Immunohistochemical Analysis of Cellular Markers

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Immunohistochemical staining, evaluation of the results, and calculation of the mean density of staining was performed as previously described [14 (link), 23 (link)]. The primary antibodies were incubated as follows: mouse monoclonal anti-Galectin-1 (sc-166618; 1:200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), anti-E-cadherin (sc-52327; 1:200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), anti- Vimentin (sc-6260; 1:200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), and anti-MMP9 (sc-21733; 1:200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), anti-NF-кB p65 (sc-8008; 1:200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), and anti-Twist (sc-81417; 1:200; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA).
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5

Western Blot Analysis of Cellular Signaling

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Total protein was extracted using a specific extraction kit (Bioteke Co., Ltd.). Approximately 50 μg of total protein per well was loaded on a 10 % sodium dodecyl sulfate (SDS)-polyacrylamide gel (Beyotime). The protein isolation procedure corresponded to the conventional method used for Western blot. The anti-TLR2 (1:1000, Abcam, ab13855), anti-NFкB P65 (1:500, Santa Cruz, sc-8008), anti-Bax (1:500, Santa Cruz, sc-7480) and anti-β-actin primary antibodies (1:500, Santa Cruz, sc-130065) were incubated at 4 °C overnight. The next day, the membranes were probed with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:5000, Santa Cruz) at room temperature for 1 h, and the chemiluminescence of the protein bands was measured using a Syngene GBox Imaging System.
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