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Padeasy

Manufactured by Agilent Technologies

The PAdEasy is a laboratory equipment product offered by Agilent Technologies. It serves as a core function for the analysis and manipulation of DNA samples. The PAdEasy provides essential capabilities for researchers and scientists working in the field of molecular biology and genetics.

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3 protocols using padeasy

1

Adenoviral Vector Construction and Quantification

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The two Ad vectors (AdEasy and AdEasy-HMGA-6) used in this study were constructed in our lab previously [27 ]. Briefly, the replication defective Ad containing plasmid (pAdEasy) was purchased from Agilent Technologies and the 148 bp synthetic HMGA-6 hyper-binding site was cloned in the pAdEasy vector (called pAdEasy-HMGA-6). The linearized pAdEasy or pAdEasy-HMGA-6 DNA was transfected into the AD293 cell line, a derivative of human embryonic kidney cell line, (Agilent Technologies) which supports the replication of the replication defective Ad to produce infectious virus particles. The viruses were quantified by plaque assay and 1.0X108 plaque forming unit (pfu)/mL concentration stock was used for this study.
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2

Adenoviral Transduction of HER2 Mutants

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Plasmid #16259 (human HER2, V654E) and plasmid #16258 (human HER2, K753M) were purchased from Addgene and sequenced. Both plasmids were originally in the vector pcDNA3 with 5’ and 3’ HindIII cloning sites. They were cloned into the HindIII site of pAdTrack-CMV (He et al., 1998 (link)). These constructs were recombined with pAdEasy in BJ5183 competent cells (Agilent Technologies). Subsequently, Adenovirus5 (Ad5) was produced and titrated using standard methods. Western blot experiments were used to verify the activity of the constructs, as described in the Results section. The GFP virus was purchased from Vector Biolabs. All viral protocols were reviewed by the URMC Biosafety committee to ensure the safety of staff and the environment.
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3

Adenovirus-Mediated HDAC2 and c-Myc Silencing

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Adenovirus vectors ADV2 (U6/CMV-RFP) encoding Rattus HDAC2 and c-Myc-specific short hairpin RNA (shRNA) were obtained from Shanghai GenePharma Co., Ltd. The following sequences were included in the present study: Adenovirus sh-HDAC2 (Ad-shHDAC2), 5′-GGTATAGATGACGAGTCATAT-3′; Ad-shc-Myc, 5′-GAATTTCTATCACCAGCAACA-3′; and Ad-sh negative control (NC), 5′-ACTACCGTTGTTATAGGTG-3′. The cytolysate products were centrifuged in a table centrifuge at 1,006.2 × g for 15 min at room temperature to harvest the viral supernatant. The AdEasy™ system (Shanghai GenePharma Co., Ltd.) was used for adenoviral vector construction. The pAdEasy (Stratagene; Agilent Technologies, Inc.) was used to package the plasmid, and the ratio of the ADV shuttle vector and packaging plasmid was 3~4:1. Subsequently, production and cell transduction of the adenovirus in 293T cells (The Cell Bank of Type Culture Collection of The Chinese Academy of Sciences) was performed, and cells were flow-cytometrically sorted to maintain a GFP positivity rate >95%. Next, H9C2 cells cultured in a 25-cm2 culture flask were incubated with Ad-shHDAC2, Ad-shc-Myc or Ad-shNC (the titer of the virus was 1×109 PFU/ml) at a multiplicity of infection of 100. DMEM without FBS was used to dilute adenovirus. After incubation for 6 h, the medium was changed to serum-containing medium for 24–48 h, followed by treatments.
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