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22 protocols using colo201

1

Characterization of CRC Cell Lines

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The CRC cell lines SW403, Colo201, KM12, HCT116, HCT15, RW2982, RKO, Caco2, HCT8, HT29, SW620 and SW948 were obtained from the ATCC. The KRAS mutant HCT116 cell line and its isogenic derivative, Hke3 in which mutant KRAS has been deleted by homologous recombination have been previously described [15 (link)] was kindly provided by Dr. S.Shirasawa to Dr. L Klampfer. Non transformed mutant KRAS inducible rat intestinal epithelial cells (IEC-I Kras) were kindly provided by Dr.Raymond DuBois [32 (link)]. This cell line expresses KrasVal12 under the control of the lac operon, and is induced by treatment with 5 mM Isopropyl β-D-1-thiogalactopyranoside (IPTG, Life Technologies, Inc., Gaithersburg, MD) [32 (link)]. The HCT116 p21−/− cell line along with the parental HCT 116 p21 +/+ was kindly provided by Prof. Bert Vogelstein. All cell lines were cultured in MEM (Gibco BRL), supplemented with 10% FBS, 2mM L-Glutamine and 1% penicillin streptomycin. For serum free experiments the cell culture media PC-1 without L- Gln was used (Lonza #77232).
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2

Colorectal Cancer Cell Lines Protocol

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The following colorectal cancer cell lines were used in this study: SW620, WiDr, HT-29, HCT116, RKO, COLO 201 and T84 and the primary colon fibroblast cell line CCD-18Co. All cell lines were purchased from the American Type Culture Collection (ATCC). All these cell lines were passaged for less than 6 months after receipt. ATCC routinely performs STR analysis on its human cell lines. The cell lines were grown in the following media: DMEM (Gibco) in the case of CCD-18Co, HT-29, T84 and SW620 cells; EMEM (Gibco) for WiDr and RKO cells; RPMI (Gibco) for COLO 201 cells and McCoy´s 5A (ATCC) for HCT116 cells. All media were supplemented with 10% of Foetal Bovine Serum (FBS), 2 mM de glutamine, 0.5 μg/ml de fungizone y 100 U/ml de penicillin-streptomycin (all from Gibco).
The stable cellular model for the overexpression and knock down of CDC42 in SW620 cells has been previously reported [8 (link)]. Briefly, SW620 cells were transfected with Lipofectamine Plus Reagent (Invitrogen, Carlsbad, CA) according to the manufacturer´s instructions using pcDNA3B-wtCdc42 and pSUPER shRNA plasmids. SW620 cell line was authenticated for the last time in May 2016 by GeneMapper v3.7 (Applied Biosystems).
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3

Characterization of Colon Cancer Cell Lines

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Murine colon tumor cell line CT26, and human colon tumor cell lines RKO, Caco2, Colo201, HT29, DLD1, LS411N, LS174T, SW480, and SW620 were purchased from ATCC (Manassas, VA, USA). The HCT116.WT (clone 8) and HCT116 p53 KO (clone 2) cell lines were kindly provided by Dr. Bert Vogelstein at Johns Hopkins Medical Institutions (Baltimore, MD, USA), via Dr. Phillip Buckhaults at the University of South Carolina (Columbia, SC, USA). All cell lines were tested every 2 months for mycoplasma, and all cell lines used in this study were mycoplasma-free at the time of the study.
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4

Colon Cancer Cell Line Culture

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The colon cancer cell lines (SW620, LoVo, SW480, HCT116, SW48, HCT15, RKO, SW837, COLO-201, COLO-205, LS174T and LS180) used in the present study were originally obtained from the American Type Culture Collection (Manassas, VA, USA). The cells were cultured in the recommended media (Dulbecco's modified Eagle's medium (Thermo Fisher Scientific, Inc., Waltham, MA, USA) for RKO, LS174T and LS180 and RPMI-1640 medium (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) for SW480, Lovo, HCT15, SW48, SW620 and HCT116 supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Inc.). The monolayer cells were maintained in a 37°C incubator with 5% CO2, observed regularly under a light microscope (magnification, ×40) and subcultured when they reached 80–90% confluency.
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5

Cultivation of Colorectal Cancer Cell Lines

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Four human colorectal cancer cell lines were used in the present study. HT29, colo 201, HCT116, HCT15, and CCD-18Co cells were purchased from the American Type Culture Collection (Manassas, VA, USA). HT29 and HCT116 cells were maintained in McCoy's 5A (Gibco, Grand Island, NY, USA) medium containing 10% fetal bovine serum (FBS) (Gibco), 100 U ml−1 of penicillin G, and 100 μg ml−1 of streptomycin at 37 °C in a humidified 5% CO2 atmosphere. HCT-15 cells were maintained in Eagle's minimum essential medium (Sigma-Aldrich, St Louis, MO, USA) containing 10% FBS (Gibco), 100 U ml−1 of penicillin G, and 100 μg ml−1 of streptomycin at 37 °C in a humidified 5% CO2 atmosphere. colo 201 cells were maintained in Roswell Park Memorial Institute 1640 Medium (Sigma-Aldrich) containing 10% FBS (Gibco), 100 U ml−1 of penicillin G, and 100 μg ml−1 of streptomycin at 37 °C in a humidified 5% CO2 atmosphere. CCD-18Co cells were maintained in Eagle's minimum essential medium (Sigma-Aldrich) containing 10% FBS, 100 U ml−1 of penicillin G, and 100 μg ml−1 of streptomycin at 37 °C in a humidified 5% CO2 atmosphere.
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6

Colon Cancer Cell Line Cultivation

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The colon cancer cell lines (HCT116, LoVo, RKO, LS174T, Colo205, Colo201, SW620, LS180, SW837, SW480, HCT15, and SW48) used in the present study were originally obtained from the American Type Culture Collection (Manassas, VA, USA). RKO, LS174T and LS180 cells were cultured in Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum (both from Thermo Fisher Scientific, Inc., Waltham, MA, USA). SW480, LoVo, HCT15, SW48, SW620 and HCT116 cells were cultured in RPMI-1640 (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) supplemented with 10% fetal bovine serum. The monolayer cells were maintained in a 37°C incubator with 5% CO2, observed regularly under a light microscope (×40) and subcultured when 80–90% confluence was reached.
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7

Culturing Human Cancer Cell Lines

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Human epidermoid carcinoma A431 cells, human esophageal cancer EC17 cells and human prostate cancer PC‐3 cells were provided by M. Kawada (Institute of Microbial Chemistry, Japan). Human esophageal cancer EC109 cells were provided by Columbia University (New York, NY, USA). Human cervical cancer HeLa cells were provided by M. Yoshida (RIKEN, Japan). Human embryonic kidney HEK293T cells were provided by S. Saiki (Juntendo University, Japan). Human colorectal tumor LoVo, HT29, Colo‐201, HCT116, LS‐174T, SW620, DLD‐1, SW48 and SW480 cells, human lung cancer A549 cells, human breast cancer MCF‐7 cells, and human melanoma A2058 cells were obtained from the American Type Culture Collection (ATCC, Rockville, MD, USA).
A431 cells were maintained in DMEM supplemented with 5% calf serum (CS), 100 U/mL penicillin G (Sigma‐Aldrich, St. Louis, MO, USA), and 0.1 mg/mL kanamycin (Sigma‐Aldrich) at 37°C in a humidified atmosphere containing 5% CO2. EC17, HEK293T, HeLa and MCF‐7 cells were maintained in DMEM supplemented with 10% FBS, 100 U/mL penicillin G, and 0.1 mg/mL kanamycin in the same conditions described above. The other cells were maintained in RPMI‐1640 medium supplemented with 10% FBS, 100 U/mL penicillin G and 0.1 mg/mL kanamycin, also in the abovementioned conditions.
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8

Cell Culture Protocol for Cancer Cell Lines

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RH7777 rat hepatoma cells were kindly donated by Dr Chiba K (Mitsubishi Tanabe Pharma). Human CRC cell lines (Caco2, COLO 201, COLO 205, COLO 320DM, HCT116, HT29, LS1034, LS123, LS174T, LS180, RKO, RKO‐E6, SNU‐C1, SW1116, WiDr), PK‐1, PK‐59, PANC‐1, MIA PaCa‐2 pancreatic, BT20, BT474 breast, A549, NCI‐H2170 lung cancers, and P3U1 mouse myeloma cells were purchased from the American Type Culture Collection (ATCC). CCK‐81 and OUMS23 human CRC cells were purchased from JCRN Cell Bank. SW‐C4 is a clone originating from SW1116, and LS‐LM411 is a highly liver‐metastatic clone from LS174T. The HEK293F human embryonic kidney cell line was purchased from Invitrogen. All cells were cultured in RD medium,12 which is a blended medium of equivalent volumes of RPMI‐1640 and Dulbecco's modified Eagle medium (Nissui Pharmaceutical Co, Ltd) containing 7% heat‐inactivated fetal bovine serum (FBS, Thermo Fisher Scientific Inc) at 37°C under humid conditions. Aseptic processing during cell culture was ideally controlled by a MediAir air purifier (Pieras Co., Ltd) equipped in the cell‐culture room. Cell growth was measured as previously described.13 Briefly, a WST‐8–based cell counting kit (Dojin Chemicals) was used, and 450 nm was measured using a microplate reader.
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9

Authentication of BRAF Mutant Colorectal Cell Lines

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The BRAFV600E colorectal cancer cell lines were sourced as follows; COLO 201, COLO 205, HT29, SW1417 and RKO (American Type Culture Collection, Manassas, VA, USA), LIM2551 and LIM2405 cells (Ludwig Institute for Cancer Research), CO115 [22 (link)], VACO432 [23 (link)], LS411 [24 (link)] and VACO5 [25 (link)]. All cell lines were maintained in Dulbecco’s Minimal Essential Media/F12 (DMEM/F12, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 5% FBS (v/v)(Moregate, Queensland, Australia) at 37 °C with 5% CO2. Cell line authentication was performed by short tandem repeat (STR) profiling using the GenePrint 10 system (Promega, Madison, WI, USA), and all lines were found to be exact matches to published profiles. Mycoplasma testing was performed every 3-6 months as part of routine monitoring in our laboratory.
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10

Colon Cell Lines Maintenance and Glycolysis Inhibition

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FHC, a human colon epithelial cell line (CRL-1831); Caco-2, a colon cancer cell line (HTB-37); SW480 (CCL-228); COLO201 (CCL-224); and HCT116 (CCL-247EMT) were acquired from American Type Culture Collection (Manassas, VA, USA). All cell lines were maintained in Dulbecco's modified Eagle medium (DMEM) (Gibco, USA) supplemented with 10% fetal bovine serum (FBS), 100 mg/mL streptomycin, and 100 units/mL penicillin (Sigma-Aldrich, USA). The cells were cultured in a 5% CO2 incubator at 37°C and 95% humidity. In some experiments, the cells were treated with 5 mM 2-deoxy-d-glucose (2-DG) for 48 h to inhibit cellular glycolysis.
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