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8 protocols using hematoxylin gill s formula

1

Quantifying Tumor Vascularity via CD31 IHC

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For CD31 staining, 4-µm sections of formalin-fixed and paraffin-embedded tumor tissue derived from EwS xenografts in mice were cut and heat treated using the Target Retrieval Solution (Agilent Technologies). Thereafter, tissue slides were stained with a primary monoclonal rat anti-CD31-antibody (DIA-310, Dianova, Hamburg, Germany; dilution 1:150, 60 min incubation at room temperature). As secondary antibody, a biotinylated and mouse-absorbed anti-rat-IgG-antibody (BA 4001, Vector; dilution 1:100) was used. After Streptavidin horseradish peroxidase (Novocastra Laboratories, Newcastle upon Tyne, United Kingdom) treatment, DAB plus (Agilent Technologies) was used for target detection. The slides were counterstained with Hematoxylin Gill’s Formula (Vector).
For evaluation of the microvessel density in the CD31-stained slides, the Chalkley-grid method was used36 (link). To this end, the number of overlaps of a CD31-positive cell with a dot of the Chalkley-grid in each quarter of the grid in four independent regions of the CD31-stained slide was counted, and the mean vessel density of the tumor was extrapolated.
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2

Immunohistochemistry of FFPE CRC Tissue

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Tissue sections (4 µm) of FFPE of human CRCs were prepared. For IHC the same antibodies as for Western blotting and IF were applied except for anti-HIF1α (clone EP1215Y; Epitomics, Burlingame, UK) which was used for IHC only. Endogenous peroxidase of sections was inhibited by 7.5% H2O2 at room temperature. Second antibody was used according to the ABC-Kit instructions. Slices were counterstaining for 10 sec. in Hematoxylin (Gill's Formula; Vector Laboratories), and coverslipped with Kaiser's glycerol gelatin (Merck) (Table S1).
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3

Osteocalcin Immunohistochemistry in Femur

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Immunohistochemical analysis of osteocalcin was performed on paraffin‐embedded femur tissues (5 µm). Briefly, sections were deparaffinized and blocked with 10% goat serum for 2 hours at 4°C, followed by incubation with monoclonal antiosteocalcin antibody (1:500; ab93876; Abcam, Cambridge, MA, USA) overnight at 4°C. Thereafter, sections were incubated in 0.3% H2O2 (Merck) for 15 min, blocked with Avidin/Biotin Blocking Kit (15 min/15 min; Biozol, Bayern, Germany) and incubated with secondary antibody (biotynliated antirabbit, 1:800; BA‐1000; Vector Laboratories, Burlingame, CA, USA) for 2 hours at 4°C. Afterwards, sections were incubated with horseradish peroxidase streptavidin (1:300; SA‐5004; Vector Laboratories) for 60 min at 4°C and stained with ImmPACT DAB Peroxidase Substrate Kit (Vector Laboratories) for 3 min. Counterstaining was done with Hematoxylin Gill's Formula (Vector Laboratories) for 5 min; dehydration slides were mounted with Eukitt Mounting Media (R. Langenbrick, Emmendingen, Germany). Sections were visualized under a microscope (Olympus, Hamburg, Germany) using 400 × magnification. Sections without primary or secondary antibody were also included. Cells positive for osteocalcin stained brown.
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4

Quantitative Analysis of TAAR1 in Ovarian Cancer

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TAAR1 expression was obtained in tissue micro arrays (TMAs), which were created from a collective of formalin-fixed, paraffin-embedded ovarian cancer samples. The experiment was initiated by deparaffinization of the slides (4 µm) by xylol. In order to inactivate endogenous peroxidase, 3% H2O2 in methanol (20 min) was used. Rehydration of the slides was obtained by a descending ethanol gradient. A pressure cooker filled with Epitope Retrieval Solution pH 9.0 (Novocastra by Leica, Wetzlar, Germany) provided the preparation of the tissue for heat induced epitope retrieval. Next, blocking solution was applied to prevent non-specific binding of the primary antibodies. The slides were incubated at room temperature for 1h with anti-TAAR1 (polyclonal rabbit IgG, Atlas Antibodies by BIOZOL, Eching, Germany) diluted 1:100. Antibody reactivity was detected using ImmPRESS Anti-Rabbit IgG Polymer Kit (Vector Lab. by BIOZOL, Eching, Germany) according to the manufacturer’s protocol, followed by application of substrate and chromogen (3,3′-diaminobenzidine Agilent Technologies, Waldbronn, Germany). In the next step, the slides were counterstained with hematoxylin Gill’s formula (Vector Lab.) and cover slipped.
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5

Immunohistochemical Staining Protocol

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The second immunohistochemical staining followed a different protocol, as it was performed in the Institute of Pathology of the University Hospital, LMU Munich. Instead of PBS, TRIS buffer (pH = 7.5) was used for rinsing. The dewaxing was followed by heat pretreatment with Target Retrieval Solution (Agilent Technologies, Santa Clara, CA, USA). After antigen retrieval, the endogenous peroxidase was blocked with 7.5% aqueous hydrogen peroxide. The 20 min incubation with blocking serum (ImmPRESS Reagent Kit Anti-Rabbit IgG; Vector, Burlingame, USA) was followed by a 60 min incubation at RT with the primary antibody (CCL22/MDC, No 500-P107, 1:200; PeproTech, Rock Hill, USA). The sections were then incubated for 30 min with anti-rabbit Ig (ImmPRESS Reagent Kit Anti-Rabbit IgG; Vector Laboratories, Burlingame, CA, USA). Visualization with DAB+ for three minutes and counterstaining with Hematoxylin Gill’s Formula (Vector Laboratories, Burlingame, CA, USA) followed. Aquatex (Merck, Darmstadt, Germany) was used for covering.
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6

Immunohistochemical Analysis of CALCB in Ewing Sarcoma

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Available tissue microarrays (TMA) of primary EwS tumors containing 2 cores of each sample, with a diameter of 1 mm, as well as internal controls were stained for CALCB. Analysis were carried out with approval from LMU Munich ethics committee.
For IHC, 4-μm sections were cut and antigen retrieval was carried out by heat treatment using target unmasking fluid (PanPath, Budel, Netherlands). Slides were incubated for 60 min at room temperature with a rabbit polyclonal anti-CALCB antibody (bs-0791R, Bioss Antibodies Inc., MA, USA; dilution 1:120). Then slides were incubated with a secondary anti-rabbit IgG antibody (Vectastain ABC-Kit Elite Universal, Vector laboratories, Burlingame, CA, USA) followed by target detection using DAB plus (Agilent Technologies, Santa Clara, CA, USA). Counterstaining was performed with Hematoxylin Gill’s Formula (Vector). Intensity of CALCB staining was scored independently by two researchers on a scale from 0 to 2 (0 = majority of the cells is negative for CALCB staining, 1 = majority of the cells shows moderate CALCB staining, and 2 = majority of the cells shows strong CALCB staining). Specificity of the anti-CALCB-antibody was assured by determination of immunoreactivity scores (IRSs) using the Remmele and Stegner scoring system35 (link) in 6–11 representative high-power fields (×40) per xenograft with/without qRT-PCR-confirmed knockdown of CALCB.
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7

CSF1R Expression in Mouse Xenograft Bone Marrow

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CSF1R staining on human in mouse xenograft bone marrow samples was performed using anti-human CSF1R primary antibody (Cell Signaling, rabbit monoclonal, clone E4T8Z, Cat. No.: 28917). Samples were formalin-fixed, decalcified in EDTA and paraffin-embedded. Heat-mediated epitope retrieval was accomplished using Epitope Retrieval Solution pH8 (Novocastra, RE7116). Slides were incubated in primary antibody for 60 min at RT at a dilution of 1:180. Biotinylated anti-rabbit IgG secondary antibody (Vector, Cat. No.: BA-1000) and Streptavidin-HRP Reagent (Novocastra, Cat. No.: RE 7104) was used for antibody detection. Finally, slides were stained with DAB+ (Agilent Technologies, Cat. No.: K3468) and counterstained with Hematoxylin Gill`s Formula (Vector, Cat. No.: H-3401).
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8

Osteoprotegerin Immunohistochemistry in Tumor Tissue

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Immunohistochemical staining was performed on 5 μm sections of tumor tissue. As primary antibody, osteoprotegerin monoclonal rabbit antibody (Abcam, Cat.No. ab124820, dilution 1: 220, Cambridge, United Kingdom) was used. Pre-treatment for antigen retrieval was performed by microwaving for 2 x 15 min at 750 W in Enhancer (Linaris, Cat.No. E7000, Dossenheim, Germany). Detection was performed using ImmPress
Reagent Kit Anti-Rabbit Ig (Fa.Vector, Cat.No. MP-7401). AEC+ (Dako, Cat.No. K3468, Hamburg, Germany) was used as a chromogen. Finally, slides were counterstained with Hematoxylin Gill`s Formula (Vector Laboratories, Cat. No. H-3401, Eching, Germany).
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