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4 protocols using 3 2h glucose

1

Isotopic Labeling of Cellular Metabolism

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For isotopic labeling experiments, cells were cultured in glucose- and glutamine-free media (Gibco) supplemented with 10% dialyzed FBS, 100 U/mL penicillin/streptomycin, 4mM glutamine (Sigma), and 20 mM of either [3-2H]glucose (98%, Cambridge Isotope Laboratories), [U-13C6]glucose (99%, Cambridge Isotope Laboratories), or [1,2-13C]glucose (99%, Cambridge Isotope Laboratories).
Cells were rinsed with PBS before addition of tracing media. For glycolytic measurements, basal media was changed 1hr before addition of tracer media and extracted at indicated time intervals. For measurement of shunting through oxPPP, cells were traced for 4hrs. For estimation of PGD contribution to cytosolic NADPH, cells were traced for 48hrs.
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2

Metabolic Profiling Protocol

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A769662 was obtained from Selleck. AICAR, compound C, FK866, Z-VAD, ferrostatin-1, and necrostatin-1 were obtained from MedChemExpress. [3-2H]-glucose, 13C5-glutamine, and [2,4,5,6-2H]-nicotinamide were purchased from Cambridge Isotope Laboratories. PMS, antimycin A, and all general chemicals were obtained from Sigma unless otherwise described.
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3

Metabolic Tracing of Carbon Sources

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PF-05175157 was provided by ChemicalBook, and lovastatin was obtained from MedChem Express. [U-13C]-glucose, [1,6-13C]-glucose, [3-2H]-glucose, [1-2H]-glucose, [6,6-2H]-glucose, and [U-13C]-glutamine were purchased from Cambridge Isotope Laboratories. Antimycin A, amino acids, pyruvate, oxaloacetate, α-ketoglutarate, citrate, malate, acetate, dimethyl α-ketoglutarate, triethyl citrate, dimethyl malate, and all general chemicals were obtained from Sigma unless otherwise described.
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4

Isotopic Tracer Preparation for Cell Culture

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The following isotopic tracers were purchased from the indicated sources: [2,3,3-2H]serine, [1-2H]glucose, [3-2H]glucose, [U-13C]glutamine and [U-13C]glucose (Cambridge Isotope Laboratories) and [2,2,3,3-2H]dimethyl succinate (Sigma-Aldrich). Isotope-labeled glucose and glutamine medium was prepared from phenol red–, glucose-, glutamine-, sodium pyruvate–, sodium bicarbonate–free DMEM powder (Cellgro) supplemented with 3.7 g/L sodium bicarbonate, 25 mM glucose and 4 mM glutamine. Isotope-labeled serine medium was prepared from scratch following the standard DMEM formula, by mixing together stock solutions containing vitamins, amino acids without serine, inorganic salts, and glucose, and thereafter supplemented with 42 mg/L [2,3,3-2H]serine. Isotope-labeled succinate medium was prepared from DMEM powder, 25 mM glucose, 4 mM glutamine supplemented with 2 mM [2,2,3,3-2H]dimethyl succinate. In HEK293T cells (but not the 3T3-L1 cells studied here) decreasing the glucose and glutamine levels in DMEM to 10 mM and 1 mM, respectively, increases fractional malate labeling from the tracer and thereby facilitates malic enzyme flux measurement. Isotopic medium was supplemented with 10% dialyzed FBS (Sigma-Aldrich) and, for differentiating cells only, 5 μg/ml insulin.
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