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46 protocols using snu 719

1

Cell Line Cultivation for Cancer Research

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Human gastric cancer cell lines (AGS, SNU638 and SNU719) and breast cancer cell lines (BT549, MCF7 and MDA-MB231), mouse melanoma cell line B16F10 were purchased from the Korean Cell Line Bank (KCLB). Human cancer cell lines were cultured in RPMI 1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin (Capricorn scientific) at 37 °C in a humidified atmosphere of 5% CO2, and B16F10 was cultured in Dulbecco’s Modified Eagle Medium (DMEM) medium under the same conditions. TQ was suspended in dimethyl sulfoxide (DMSO) (Sigma-Aldrich, St. Louis, MO, USA).
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2

Gastric Cancer Cell Lines Cultivation

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GC cell lines (AGS, NCI-N87, KatoIII) were obtained from American Type Culture Collection (ATCC, Manassas, VA, USA). AGS-EBV, an EBV-infected GC cell line,30 (link) was a gift from Dr Shannon C Kenney (Department of Oncology and Medicine, McArdle Laboratory for Cancer Research at the University of Wisconsin, Madison, WI, USA). MKN28, MKN45, SNU16, SNU620, SNU638 and SNU719 cell lines were obtained from the Korean Cell Line Bank (Seoul, Korea). YCCEL1 was a gift from Sun Young Rha at Yonsei Cancer Center, Yonsei University College of Medicine, Seoul, Korea. BGC823, MGC803 and the immortalized normal human gastric epithelial cell line GES-1 were gifts from Oncology Hospital, Beijing University, Beijing, China. Cells were cultured in RPMI 1640, Dulbecco's modified Eagle's medium or McCoy medium (Gibco BRL, Rockville, MD, USA) supplemented with 10% fetal bovine serum (Gibco BRL).
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3

Gastric Cancer Cell Line Characterization

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SNU-638, SNU-719, AGS, and NCI-N87 (subsequently referred to as N87) are Lauren intestinal-type gastric adenocarcinoma cell lines, and KATOIII, SNU-668, SNU-601, and MKN-45 are Lauren diffuse-type gastric adenocarcinoma cell lines. AGS, N87, SNU-601, and MKN-45 cells were obtained from the America Type Culture Collection (ATCC). SNU-638, SNU-719, KATOIII, and SNU-601 are from the Korean Cell Line Bank (KCLB). KATOIII cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM). All other gastric cancer cell lines were maintained in RPMI 1640. All media were supplemented with 10% FBS, 100 U/mL penicillin and 100 mg/mL streptomycin, and L-glutamine 2 mmol/L (“regular media”). Cancer cell lines were actively passaged for less than 6 months from the time that they were received from ATCC, and UKCCCR guidelines were followed (13 (link)). 5-fluorouracil was purchased from US Biological, and cisplatin was purchased from Enzo Life Sciences. RhoA inhibitor (Rhosin), PI3K inhibitor (LY294002), JNK inhibitor (SP600125), MEK I and II inhibitor (U0126) and p38 MAP kinase inhibitor (SB202190) were purchased from Calbiochem. ROCK inhibitor (Fasudil) was purchased from Abcam.
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4

Gastric Cancer Tissue Collection

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Total 180 gastric tissues including 100 primary carcinomas, 4 adenomas, 6 hamartomas, 6 hyperplastic polyps, and 64 normal gastric tissues were obtained were obtained from 100 gastric cancer patients and 80 noncancer patients by surgical resection in the Kyung Hee University Medical Center (Seoul, Korea). Signed informed consent was obtained from each patient. Tissue specimens were snap-frozen in liquid N2 and stored at −70 °C until used. Tissue slices were subjected to histopathological review and tumor specimens composed of at least 70% carcinoma cells and adjacent tissues found not to contain tumor cells were chosen for molecular analysis. Fourteen human gastric cancer cell lines (SNU5, SNU16, SNU216, SNU484, SNU601, SNU620, SNU638, SNU719, MKN1, MKN28, MKN45, MKN74, AGS, and KATO-III) were obtained from Korea Cell Line Bank (Seoul, Korea) or American Type Culture Collection (Rockville, MD).
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5

Cultivation of Human Gastric Cancer Cell Lines

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Human gastric cancer cells (MKN-28, MKN-45 and MKN-74) were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). Other human gastric cancer cells (SNU-216, SNU-484, SNU-601, SNU-638, SNU-668, SNU-719 and AGS) were purchased from Korean Cell Line Bank (Seoul, South Korea). The medium was changed every 3 days, and all cell lines were maintained at 37°C in a 5% CO2-humidifed atmosphere. All the cell lines were banked and passaged for less than 3 months before they were used for experiments.
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6

Cell Line Cultivation for Cancer Research

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Ty82, and MKN7 cell lines were obtained from JCRB cell bank (Japan). SNU638, SNU719, SNU668, SNU216, MKN45, MKN74 and MKN1 cell lines were obtained from Korean cell line Bank (Korea). All cell lines were cultured with RPMI-1640 supplemented with 10% fetal bovine serum.
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7

Evaluating RUNX3 in Gastric Cancer

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Human gastric cancer cell lines, AGS (ATCC), AZ521, MKN45, KatoIII, (RIKEN, BioResource Center, Tsukuba, Japan), SNU216, SNU484, SNU601, SNU638, SNU668 and SNU719 (Korean Cell Line Bank, Seoul, Korea) were cultured in RPMI1640 supplemented with 10% FBS. The cell proliferation rate was examined using the Alamar Blue Cell Viability Reagent (Invitrogen, Carlsbad, CA, USA). For the soft agar colony formation assay, cells were suspended in 0.33% agarose contained in the medium and seeded on 0.5% bottom agar. After 21 days of culture, soft agar was stained with Giemsa solution (Wako, Osaka, Japan) and colony numbers were scored.
Cells were transfected with pcDNA3, pcDNA-Flag-RUNX3 or pcDNA-Flag-RUNX3(R122C) vector.(6 (link)) KatoIII-R3 stable cell line was constructed by transfection with pcDNA-RUNX3 and selected with G418 (Wako) at 100 μg/mL. To knock down gene expression, cells were transfected with Silencer Select siRNA for RUNX3 or β-catenin (Ambion, Cambridge, MA, USA).
To examine the Wnt activation level, cells were cotransfected with super 8× TOPflash or Super 8× FOPflash (Addgene, Cambridge, MA, USA), together with pcDNA3, pcDNA-Flag-RUNX3 or pcDNA-Flag-RUNX3(R122C).(6 (link)) At 24 h after transfection, the luciferase activity was measured using a Luciferase assay system (Promega, Madison, WI, USA).
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8

Culturing EBV-Positive and Negative Gastric Cancer Cells

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Both human gastric cancer cell lines, SNU-638 (the EBV-negative) and SNU-719 (the EBV-positive), were obtained from the Korea Cell Line Bank (Seoul, Korea). Cells were maintained in RPMI-1640 media supplemented with 10% FBS in a humidified 5% (v/v) CO2 atmosphere at 37°C.
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9

Profiling Human Normal and Gastric Cancer Tissues

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Nineteen RNA samples from different human normal tissues were purchased commercially (Ambion, Austin, TX). Primary GC tissues were obtained from the Prince of Wales Hospital and Beijing Cancer Hospital and stored at −80 °C. All the samples have obtained Informed consent and the study protocol was approved by Clinical Research Ethics Committee of the Chinese University of Hong Kong and Beijing Cancer Hospital. Eighteen GC cell lines were used in this study. AGS, BGC823, KATOIII, MKN1, MKN28, MKM45, MKN74, N87, and SNU1 cell lines were obtained from ATCC (American Type Culture Collection, Manassas, VA, USA). TMK1, SNU16, SNU638, SNU719, and YCC10 cells were obtained from Korean Cell Line Bank (Seoul, Korea). HGC27, GES1, MGC803, and SGC7901 cells were purchased from Chinese Academy of Sciences (Shanghai, China). All cell lines used in this study have been authenticated and tested for mycoplasma contamination.
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10

Diverse Cell Line and Cancer Tissue Sourcing

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Cell lines were obtained from ATCC (USA) (MKN-28, AGS, KATOIII, HCT-116, MDA-231, SK-BR-3, JIMT-1, U87MG, A549, CEM-119, HeLa, Jurkat and HDF) and from Korean Cell Line Bank (Seoul National University, Korea) (SNU-216, SNU-638, SNU-719, and SNU-C5) were cultured with designated media supplemented with 10% fetal bovine serum and 1x penicillin-streptomycin at 37 °C 5% CO2 incubator. Human stomach cancer tissues and peri-tumoral normal counter parts were excised within 10 min from the gastrectomy, and preserved in RNAlater solution until RNA purification at 4 °C. All patients provided informed consent prior to collection of tissues, and all methods were performed in accordance with the relevant guidelines and regulations approved by the Institutional Review Board of National Cancer Center of Korea (NCCNCS13732).
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