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Odyssey infrared scanning system

Manufactured by LI COR
Sourced in United States

The Odyssey infrared scanning system is a high-performance imaging platform designed for quantitative Western blotting and multiplex fluorescence detection. It utilizes two-color infrared fluorescence detection technology to provide accurate and sensitive protein quantification. The system is capable of scanning a wide variety of sample types, including gels, membranes, and microplates.

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35 protocols using odyssey infrared scanning system

1

Protein Detection and Analysis by Western Blotting

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For Western blotting, cells were lysed in phosphate buffered saline (PBS) with 1% (vol/vol) Triton X-100 and protease inhibitor mixture. The protein concentration was determined with a bicinchoninic acid (BCA) assay kit (Thermo Fisher Scientific), and equal amounts were resolved on NuPAGE 4 to 12% precast gels (Invitrogen). Blotting was performed onto polyvinylidene fluoride membranes (Immobilon-FL; EMD Millipore) followed by detection using the Odyssey infrared scanning system (LI-COR Biosciences). For GFP-based immunoprecipitations, HEK293T cells were lysed 48 h after transfection in immunoprecipitation buffer (50 mM Tris⋅HCl, 0.5% (vol/vol) Nonidet P-40, and Roche protease inhibitor mixture) and subjected to GFP trap (ChromoTek). Immunoblotting was performed using standard procedures. Detection was performed on an Odyssey infrared scanning system (LI-COR Biosciences) using fluorescently labeled secondary antibodies.
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2

Western Blotting and Immunoprecipitation Protocols

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For western blotting, cells were lysed in PBS with 1% (v/v) Triton X-100 and protease inhibitor cocktail. The protein concentration was determined with a BCA assay kit (Thermo Fisher Scientific, USA), and equal amounts were resolved on NuPAGE 4% to 12% precast gels (Invitrogen, USA). Blotting was performed onto polyvinylidene fluoride membranes (Immobilon-FL; EMD Millipore, USA) followed by detection using the Odyssey infrared scanning system (LI-COR Biosciences, USA). For GFP-based immunoprecipitations, HEK-293T cells were lysed 48 hours after transfection in immunoprecipitation buffer (50 mM Tris-HCl, 0.5% (v/v) NP-40, and Roche protease inhibitor cocktail) and subjected to GFP trap (ChromoTek, Germany). Immunoblotting was performed using standard procedures. Detection was performed on an Odyssey infrared scanning system (LI-COR Biosciences) using fluorescently labeled secondary antibodies. In using the Odyssey, we routinely performed western blot analysis where a single blot is simultaneously probed with antibodies against 2 proteins of interest (distinct antibody species) followed by visualization with the corresponding secondary antibodies conjugated to distinct spectral dyes.
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3

Western Blotting and GFP Immunoprecipitation

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For western blotting, cells were lysed in PBS with 1% (v/v) Triton X-100 and protease inhibitor cocktail. The protein concentration was determined with a BCA assay kit (Thermo Fisher Scientific), and equal amounts were resolved on NuPAGE 4-12% precast gels (Invitrogen). Blotting was performed onto polyvinylidene fluoride membranes (Immobilon-FL; EMD Millipore) followed by detection using the Odyssey infrared scanning system (LI-COR Biosciences). For GFP-based immunoprecipitations, HEK-293T cells were lysed 48 h after transfection in immunoprecipitation buffer (50 mM Tris-HCl, 0.5% (v/v) NP-40, and Roche protease inhibitor cocktail) and subjected to GFP trap (ChromoTek).
Immunoblotting was performed using standard procedures. Detection was performed on an Odyssey infrared scanning system (LI-COR Biosciences) using fluorescently labeled secondary antibodies. In using the Odyssey, we routinely performed Western blot analysis where a single blot is simultaneously probed with antibodies against two proteins of interest (distinct antibody species) followed by visualization with the corresponding secondary antibodies conjugated to distinct spectral dyes.
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4

Protein Expression Analysis by Western Blot

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Proteins were isolated with RIPA lysis buffer (Beyotime, Jiangsu, China) after 48h of transfection. Protein lysates were separated by 10% sodium dodecyl sulfate-polyacrylamide gels and then transferred to nitrocellulose membrane (Beyotime, Jiangsu, China). nitrocellulose membrane with proteins were immunoblotted overnight at 4°C with primary antibodies: anti-PCNA (Proteintech, USA), anti-Wnt7b (Proteintech, USA), β-catenin (Proteintech, USA), Gsk-3β (Proteintech, USA), cyclin D1 (Abcam, USA), C-myc (Wanlei, China). Subsequently, the membranes were incubated in secondary antibodies for 1h at room temperature. Dilutions of all antibodies used in this study were 1:1000. Odyssey Infrared scanning system (Li-Cor, Lincoln, NE, USA) was used to visualize protein bands.
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5

GFP-Tagged Protein Immunoprecipitation

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RPE-1 cell lines stably transduced with the desired GFP-tagged constructs were lysed in Tris-based immunoprecipitation buffer (50 mM Tris-HCl, 0.5% NP-40, and Roche protease inhibitor cocktail) and the GFP immunoprecipitated with GFP-Trap beads (ChromoTek). Immunoblotting was performed using standard procedures. Detection was performed on an Odyssey infrared scanning system (LI-COR Biosciences) using fluorescently labeled secondary antibodies.
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6

Colonic Tissue Protein Extraction and Western Blot Analysis

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Total proteins from the colonic tissues and cells were extracted using a standard extraction reagent supplemented with the protease inhibitor (KANGCHEN; Shanghai, China). Protein concentrations were calculated through the BCA kit (Beyotime, China), according to the manufacturer's instructions. Equal amounts of proteins (30 μg) were subjected to the SDS-PAGE gel and then transferred onto a polyvinylidene fluoride (PVDF; Millipore, USA) membrane. The membranes were blocked with 5% skim milk in PBS at room temperature for 1 h, followed by the incubation with the primary antibodies against rabbit anti-Akt (1 : 1,000), rabbit anti-p-Akt (1 : 2,000), rabbit anti-IKK (1 : 1,000), rabbit anti-NF-κB p65 (1 : 1,000), rabbit anti-p-NF-κB p65 (1 : 1,000), rabbit anti-caspase-1 P20 (1 : 1,000), rabbit anti-Gasdermin N (1 : 1,000), rabbit anti-PHLPP2 (1 : 2,000), and β-actin (1 : 2,000) for 24 h at 4°C. Subsequently, the blots were washed with TBST three times (10 min for each wash) and incubated with anti-rabbit IgG (1 : 10,000) for 1 h. Finally, immunoreactive bands were visualized with an Odyssey infrared scanning system (LI-COR Biosciences, USA) and quantified using ImageJ software.
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7

Quantification of Protein Expression by Western Blot

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Total proteins were extracted by RIPA lysis buffer (Beyotime, China) together with PMSF (Beyotime, China). The concentration of total protein was determined by BCA protein assay kit (Beyotime, China). After being separated by 10% sodium dodecyl sulfate-polyacrylamide (SDS-PAGE) gels, proteins lysates were transferred to nitrocellulose membranes (Beyotime, China). The membranes were blocked with 5% non-fatty milk for 1 h at room temperature and then immunoblotted at 4 °C overnight with primary antibodies: anti-WBP2 (1:1000, Proteintech, USA), anti-AKT (1:1000, Proteintech, USA), anti-p-AKT (1:1000, Abcam, USA) and anti-β-actin (1:10,000, Abclonal, China). After incubated with diluted secondary antibodies for 1 h at room temperature, the bands were scanned and analyzed by Odyssey Infrared scanning system (LI-COR Biosciences, USA). Original western blots were shown in Fig. S1.
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8

Western Blot Protein Analysis

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For Western blotting, cells were lysed in PBS with 2% Triton X-100 containing Pierce protease and phosphatase inhibitor tablets (Thermo Fisher Scientific). The protein concentration was determined with a bicinchoninic acid assay kit (Thermo Fisher Scientific), and equal amounts were resolved on NuPAGE 4–12% precast gels (Invitrogen). Blotting was performed on polyvinylidene fluoride membranes (Immobilon-FL, EMD Millipore) followed by detection using the Odyssey infrared scanning system (LI-COR Biosciences).
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9

Western Blot Analysis of β2-AR Protein

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Total protein was extracted with the procedures as described [41 ]. Briefly, Protein samples (80-100 μg) were separated by 10% acrylamide gel electrophoresis (SDS-PAGE), and then transferred to nitrocellulose membrane. The membranes were blocked with 5% defatted milk for 2-3 h at room temperature on a rocker and then incubated with primary antibodies β2-AR (Abcam, Cambridge, MA, UK) and beta-actin (Proteintech, Wuhan, China) at 4°C overnight. After washing with PBS-T (PBS containing 0.5% Tween 20) for 3 times, the membranes were incubated with infrared fluorescent dye-labeled secondary antibody (LI-COR Biosciences, Lincoln, USA) for 50 min at room temperature away from light. Western blot bands were acquired using Odyssey infrared scanning system (LI-COR Biosciences, Lincoln, USA) and analyzed using Image Studio Ver 4.0 software.
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10

Western Blotting Protein Detection

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For western blotting, cells were lysed in PBS containing 2% Triton X-100 and Pierce protease and phosphatase inhibitor tablets (Thermo Fisher Scientific). The protein concentration was determined with a BCA assay kit (Thermo Fisher Scientific), and equal amounts were resolved on NuPAGE 4–12% precast gels (Invitrogen). Proteins were transferred from gels onto PVDF membrane (Immobilon-FL, pore size 0.45 μm, Millipore, catalogue number IPFL00010) for immunoblotting. Transfer was performed in transfer buffer (25 mM Tris, 192 mM glycine and 10% methanol) at 100 V for 70 min. Membranes were blocked in 5% milk in PBS containing 0.1% Tween 20 (PBS-T) prior to incubation with the appropriate primary antibodies and fluorescently labelled secondary antibodies. Detection and quantification were carried out using an Odyssey infrared scanning system (LI-COR Biosciences).
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