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Trifluoroacetic acid

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Belgium, Germany, France

Trifluoroacetic acid is a commonly used reagent in organic chemistry. It is a colorless, fuming liquid with a pungent odor. The primary function of trifluoroacetic acid is as a strong acid and deprotecting agent in various chemical reactions and processes.

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227 protocols using trifluoroacetic acid

1

Quantification of Native β-Lg by HPLC

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The native β-Lg concentration after heat treatment was determined by HPLC using the supernatant recovered after centrifugation (9000 rpm for 30 min at 4 °C) of the samples adjusted to pH 4.6. The chromatographic system was an Alliance e2695 Separation Module (Waters, Milford, MA, USA), composed by a XBridge Protein BEH C4 300 Å, 3.5 µm, 4.6 mm × 250 mm separation column associated with a guard column (Sentry Guard Cartridge, Waters). The two mobile phases used were 0.1% (v/v) of trifluoroacetic acid (99%, Acros Organics) in Milli-Q water as solvent A and 0.1% (v/v) trifluoroacetic acid, 80% acetonitrile (HPLC grade, Thermo Fisher Scientific) and 20% Milli-Q as solvent B. 20 µL of each sample was injected in the column maintained at 40 °C. The separation was performed at a flow rate of 1 mL/min with gradient elution and a detection wavelength of 215 nm. Analyses were repeated two times for each sample and three times for each standard. Calibration standards in the range from 0.25 to 3 g/L were prepared by dissolving a β-lg powder (BioPure industrial powder, Davisco, Foods International, Inc., Minnesota: β-lg at 88.85% purity) in Milli-Q water.
The native β-lg concentrations were calculated by averaging the measured chromatographic areas and converting each area into concentration by means of the calibration curve.
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2

Quantification of Analgesics and Sedatives

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Ultrapure water was produced by Milli-Q Advantage A10 system (Millipore, Molsheim, France, resistivity: 18.2 MΩ cm−1). Acetonitrile and methanol of high-performance liquid chromatography (HPLC) grade, and trifluoroacetic acid (TFA) 99% were purchased from Fisher Scientific, Porto Salvo, Portugal. Ibuprofen, acetaminophen, and phenobarbital were purchased from Sigma-Aldrich (Algés, Portugal) with a purity of 99.9%.
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3

Multifunctional Immunostimulatory Hydrogel Nanoparticles

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Poly(ethylene glycol) diacrylate (Mn 700) (PEG700DA), 2-aminoethyl methacrylate hydrochloride (AEM), diphenyl (2,4,6-trimethylbenzoyl)-phosphine oxide (TPO), thiol modified CpG 1826 (C6-S-S-C6-tccatgacgttcctgacgtt), dithiothreitol (DTT), sucrose, and DNase, RNase free sterile water were purchased from Sigma-Aldrich. Tetraethylene glycol monoacrylate (HP4A) was synthesized in house. Cysteine modified OVA257–264 (CSIINFEKL) were purchased from Peptide 2.0. Trifluoroacetic acid, methanol, dimethyl sulfoxide (DMSO), PTFE (polytetrafluoroethylene) syringe filters (13 mm membrane, 0.22-μm pore size), HPLC grade water, and acetonitrile were obtained from Fisher Scientific. Conventional filters (2 μm) were purchased from Agilent Technologies, and poly(vinyl alcohol) (Mw 2000) (PVOH) was purchased from Acros Organics. N-Succinimidyl 3-(2-pyridyldithio)propionate (SPDP) was purchased from Thermo Scientific. Ortho-pyridyldisulfide-PEG-N-hydroxylsuccinimide ester (NHS-PEG (2k)-OPSS) was purchased from Creative PEGworks. PRINT molds (80 nm × 320 nm) were obtained from Liquidia Technologies. DNA grade NAP-10 columns were purchased from GE Healthcare. RPMI1640 medium, penicillin and streptomycin, L-glutamine, and fetal bovine serum (FBS) were all from Life Technologies.
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4

HPLC-based Chemical Characterization

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HPLC grade acetonitrile (ACN) and HPLC grade water were purchased from B & J Brand (Honeywell Burdick & Jackson, Muskegon, MI). Chloroform, Trifluoroacetic Acid (TFA), Tris and 2,5 dihydroxybenzoic acid (DHB) were all obtained from Fisher Scientific (Fair Lawn, NJ). Sodium Chloride (NaCl) was obtained from Amreoco Life Science (Solon, OH).
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5

Plant Extract Analytical Protocols

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Ethyl alcohol and acetone, used for the extraction process, were obtained from Sigma Aldrich (Steinheim, Germany). The materials used for the analysis of the extracts were Folin Ciocalteu phenol reagent (2N) obtained from Merck (Darmstadt, Germany), sodium sufhate anhydrous (>99%) from Mallinckrodt (St. Louis, MS, USA), 2,2-diphenyl-1-picryl hydrazyl (DPPH) from Sigma-Aldrich (Steinheim, Germany) and gallic acid (98% w/w) from Acrōs Organics (Fair Lawn, NJ, USA). The standard compounds used in the study were quercetin dihydrate and rosmarinic acid, products of Sigma-Aldrich (Steimheim, Germany). Carnosic acid was obtained from Dayang Chemicals Co (Hangzhou, China), and carnosol from Extrasynthese (Lyon, France). Water, acetonitrile, methanol, and trifluoroacetic acid for LC-MS analyses were obtained from Fisher Chemical (Leicestershire, UK).
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6

Sorafenib Mass Spectrometry Analysis

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Methanol (≥99.9%), acetonitrile (ACN) and deionized water, as well as LC-MS CHROMASOLV, were purchased from Honeywell (Wunstorfer, Strasse, Seelze, Germany). Trifluoroacetic acid (TFA) and formic acid (FA) were purchased from Fisher Scientific (Loughborough, UK). Hydrochloric acid (HCl) (37%) was purchased from VWR chemicals (France). C18 columns, lysis buffer, Pierce trypsin protease, lysyl-endopeptidase LysC and Pierce protease inhibitor tablets were obtained from Thermo Scientific (Rockford, IL, USA). Bradford’s reagent and bovine serum albumin were bought from Sigma-Aldrich (St. Louis, MO, USA). Sorafenib was obtained from BioVision (Milpitas, CA, USA #BAY 43-9006).
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7

Synthesis of Rare-Earth Doped Nanoparticles

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1-Octadecene (ODE, technical grade, 90%),
triethyloxonium tetrafluoroborate ([Et3O][BF4], ≥97.0%), acetonitrile (ACN, 99.8%, anhydrous), chloroform
(≥99%, anhydrous), and methanol (≥99.9%, anhydrous)
were purchased from Sigma-Aldrich. Oleic acid (extra pure), trifluoroacetic
acid (HTFA, ≥99.0%, for HPLC), trifluoroacetic anhydride (TFAA,
≥99.0%), lithium carbonate (Li2CO3, 99.999%,
trace metal basis), yttrium oxide (Y2O3, 99.9999%,
REO), and ytterbium oxide (Yb2O3, 99.998%, REO)
were purchased from Fisher Scientific. Toluene (≥99.8%, anhydrous)
and ethanol (≥99.8%, anhydrous) were purchased from VWR Chemicals.
Hexane (>96.0%, anhydrous) was purchased from TCI. Deuterium oxide
(D2O, >99.90% D) was purchased from Fluorochem Ltd.
All chemicals were used as received unless specified differently.
All manipulations were performed under a N2 atmosphere
using standard Schlenk line techniques or a nitrogen-filled glove
box (<0.1 ppm H2O; <0.1 ppm O2) unless
otherwise mentioned.
Milli-Q water was obtained from a Milli-Q
Advantage A10 system
(Merck Millipore, 18.2 MΩ·cm, 2 ppb TOC).
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8

Comprehensive Lipid and Compound Analysis

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Cis-4,7,10,13,16,19-Docosahexanoic acid (DHA) and apigenin were purchased from Carbosynth Ltd. Formic acid (98%, LC-MS grade) was obtained from Fluka. Methanol, water, LC-MS grade, as well as N, N’-dicyclohexylcarbodiimide (DCC), dimethylaminopyridine (DMAP), Methanol, dichloromethane, acetonitrile, HPLC grade all, and trifluoroacetic acid (peptide synthesis grade) were obtained from Fisher Scientific. TLC of the highest available purity was carried out on silica gel plates (UV254) obtained from Alfa Aesar. DMSO (LC-MS grade) was purchased from Thermo Scientific. DMSO-d6 (99.8%) was purchased from Euriso-top. NMR experiments were performed on a Bruker Avance 400 MHz spectrometer equipped with a z-gradient unit (Bruker BioSpin, Rheinstetten, Germany). Membrane filters with a 0.2 μm pore size and a 4 mm diameter were purchased from Phenomenex. High purity argon was used as a collision gas. ADP was obtained from Chrono-Log Corp (Havertown, PA, USA). AA was purchased from Sigma-Aldrich, St. Louis, MO, USA, and TRAP-6 was obtained from Bachem, Bubendorf, Switzerland. For the stability studies, drug-free human plasma from healthy donors was kindly offered from the Blood Donation Center of the University Hospital of Ioannina.
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9

Metabolite Extraction and Quantification

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LC-MS grade water, LC-MS grade acetonitrile, LC-MS grade ammonium acetate, LC-MS grade formic acid, and trifluoroacetic acid (99.5%) were purchased from Fisher Scientific (Morris Plains, NJ). Hydrochloric acid 0.1 N was purchased from J.T. Baker (Phillipsburg, NJ). Analytical grade reagents including ammonium acetate, oxalic acid, l-cysteine, hepta-fluoroacetic acid, hexylamine, acetic acid, and PBS were purchased from Sigma-Aldrich (St. Louis, MO). The IROA Technologies Mass Spectrometry Metabolite Library kit was also purchased from Sigma-Aldrich. l-lysine (13C6,15N2) was purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA). N-acetyl-l-glutamic-2,3,3,4,4-d5 acid was purchased from CDN Isotopes (Quebec, Canada). l-Aspartic acid-13C4,15N,trans-cinnamic acid-β,2,3,4,5,6-d6, and l-leucine-13C6 were purchased from Sigma-Aldrich. The five isotopically labeled standards were used to prepare an IS diluent at a final concentration of 1 μg/mL in water.
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10

Synthesis and Characterization of Cationic Polymers

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Anhydrous N,N-dimethylformamide (DMF), trifluoroacetic acid (TFA), triphosgene, trimethylamine (TEA), KHCO3, calcium chloride, magnesium chloride, and solvents like tetrahydrofuran (THF), diethyl ether, hexane, and methanol were purchased from Fisher Scientific Korea (Incheon, Korea) and used without purification. L-phenylalanine (Phe), 1,3-Diisopropylimidazolium chloride, and ε-benzyloxycarbonyl-L-lysine (Cbz-Lys) were purchased from Fisher Scientific Korea and stored under N2. Hexylamine (HA); tris-(2-aminoethyl)amine (TREN); polyethylenimine, branched (PEI; number average molecular weight = 600); 1H-pyrazole-1-carboxamide monohydrochloride; and 33 wt% hydrogen bromide solution in acetic acid were purchased from Merck Korea (Seoul, Korea) and stored under nitrogen. All reactions and polymerization were carried out under nitrogen atmosphere using the Schlenk techniques. Escherichia coli BL21 (E. coli) and Bacillus subtilis ATCC 6633 (B. subtilis) were obtained from the Korean Collection for Type Cultures (Jeollabuk-do, Korea). Sewage was provided by the East Busan Sewage Treatment Plant (Busan, Korea).
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