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11 protocols using gdf11

1

Comprehensive Cell Signaling Assays

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We used antibodies against total SMAD2 (D43B4, #5339), pSMAD2 (Ser465/467, 138D4, #3108), cleaved Caspase 7 (#9491), TGFβR1 (#3712) and TGFβR3 (#2519) from cell signaling, GAPDH (#G9545) from Sigma-Aldrich, Actin (#A5316) from Thermo Fisher, TGFβR3 from Santa Cruz Biotechnology (#sc-17792), and ACTRV2B from Abcam (#ab76940). Recombinant human TGFβ 1, GDF3, GDF8, GDF11, and activin A were obtained from Peprotech and stored at −80 °C in 4 mM HCl, 1 mg/mL bovine serum albumin (TGFβ, GDF8, GDF11) or 1 mg/mL bovine serum albumin (GDF3, activin A). Gefitinib (EGFRi, used at 10 µM) and Selumetinib (MEKi, used at 1 µM) were purchased from Sellekchem, LY294002 (PI3Ki, used at 50 µM) from Alexis Biochemicals and Palbociclib (CDK4/6i, used at 10 µM) from MedchemExpress. Inhibitors were diluted in dimethyl sulfoxide (DMSO) and stored at −20 °C.
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2

Cytokine Reconstitution and Dilution Protocol

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GDF11 (Peprotech) was reconstituted in water at 250 μg/ml for in vitro experiments or 1 mg/ml for in vivo experiments. GDF8/MSTN (Peprotech) was reconstituted at 250 μg/ml in water. TGFβ1 (Peprotech) was reconstituted at 50 μg/ml in 10 mM citric acid (pH 3.0) as recommended by the manufacturer. BMP4 (Peprotech) was reconstituted at 100 μg/ml in 10 mM citric acid (pH 3.0). BMP7 (Peprotech) was reconstituted at 100 μg/ml in water. BSA (Fisher) was reconstituted as a control at 1 mg/ml in water. Cytokines were diluted to 20× final concentration in serum-free medium immediately before addition of 1/20th volume to cells for stimulation.
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3

Administering Rejuvenating GDF11 in Mice

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GDF11 (Peprotech, Cat# 120‐11) was dissolved in water, further diluted according to the manufacturer's instructions, and injected at a concentration of 1 mg/kg. Control mice (young or aged) were injected with equivalent volumes of saline. Injection concentration was chosen based on a pilot study with three different concentrations (0.1, 0.5, and 1.0 mg/kg) where consistent weight loss and brain rejuvenation were observed upon 1 mg/kg GDF11 administration. The half‐life of GDF11 at these concentrations was found to be of 12 hr.
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4

Generation of Cardiomyocytes from Fibroblasts

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MEFs or TTFs were seeded onto six-well plates (coated with 1:100 Matrigel from BD Biosciences for 1 h at room temperature) at a density of 50 000 cells per well and cultured in fibroblast growth medium. After 24 h, the medium was replaced with CRM plus various compound combinations, such as CRFVPT. CRM is composed of knockout DMEM (Gibco), 15% FBS, and 5% KSR (Gibco), 0.5% N2 (Gibco), 2% B27 (Gibco), 1% Glutamax, 1% NEAA, 0.1 mM β-mercaptoethanol (Gibco), 50 μg/ml 2-phospho-L-ascorbic acid (vitamin C, Sigma), 100 units/ml penicillin and 100 μg/ml streptomycin. CRFVPT cocktail consists of 10 μM CHIR99021 (C); 10 μM RepSox (R); 50 μM Forskolin (F); 0.5 mM VPA (V); 5 μM Parnate, (P); 1 μM TTNPB (T). CRM containing chemical compounds was changed every 4 days. At the second stage of induction (day 16 for MEF, day 20 for TTF), cells were cultured in CMM for various days. CMM is composed of DMEM medium with 15% FBS, 2i (3 μM CHIR99021 and 1 μM PD0325901), 1 000 units/ml LIF, 50 μg/ml vitamin C, and 1 μg/ml insulin (Sigma). The following growth factors were also tested in CMM for the generation of TTF-derived CiCMs: Tβ-4 (100 ng/ml, PeproTech), GDF-11 (100 ng/ml, PeproTech), G-CSF (20 ng/ml, R&D systems), NRG1-β1 (100 ng/ml, R&D systems).
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5

3D Overlay Culture Optimization

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3D overlay cultures were performed on top of Matrigel (BD Biosciences) as described previously for MCF-10A cells (Debnath et al., 2003 (link)) with seeding conditions and culture media optimized for each cell line (Table S5). Briefly, 45 μl of Matrigel was spread with a pipette tip on the bottom of an 8-well chamber slide. A suspension of single-cells was laid on top of the Matrigel with the density and media described in Table S5. 3D culture medium was replaced every four days as originally described (Debnath et al., 2003 (link)). For ligand supplementation, 250 ng/ml GDF11 (Peprotech) or 1–50 pg/ml TGFβ (Peprotech) was added to the 3D culture medium at the time of plating and in subsequent medium changes. For long-term knockdown experiments, cells were treated with 1 μg/ml doxycycline (Sigma) for three days before 3D culture, and doxycycline was maintained in the 3D culture medium throughout the experiment. For timed knockdown experiments, 1 μg/ml doxycycline was added to the day 4 medium replacement. For inducible overexpression experiments, cells were treated with 1 μg/ml doxycycline at time of seeding or for 24 hours before 3D culture, and doxycycline was maintained in the 3D culture medium throughout the experiment.
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6

Continuous GDF11 Delivery in Mice

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EYFP-NG2 knock-in mice were implanted intraperitoneally with osmotic minipumps (Alzet Micro-Osmotic Pumps, model 1004, DURECT Corporation) at P150 for continuous i.p. delivery at a flow rate of 0.11 μl/h containing GDF11 (0.1mg/kg/d; rGDF11, catalog # 120-11, PeproTech) or saline. After 4-weeks delivery mice were used for electrophysiological recordings, only cells responding to an agonist were used for comparisons, the proportion of cells responding did not differ between conditions. The use of minipumps ensured reduced stress responses of the animals and consistent dosing compared to i.p. injections which require daily handling.
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7

Cytokine Signaling Pathway Profiling

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Recombinant human IL-37 was purchased from Life Technologies (Thermo Fisher Scientific, Gaithersburg, MD) or R&D Systems (Minneapolis, MN). Possible TGF-β1 contamination in IL-37 was undetectable as determined by ELISA (R&D Systems, Minneapolis, MN). Anti-IL-37 antibodies were purchased from R&D Systems (Minneapolis, MN) or Abcam (Cambridge, MA). For Western blot analysis, antibodies against p-Smad1/5/8, Smad1/5/8, p-Smad2/3, Smad2/3 and β-actin were purchased from Cell Signaling Technology. Recombinant human TGF-β, BMP10 and GDF11 were purchased from Peprotech. Anti-human ALK1 antibodies, anti-human ALK5 antibodies, anti-mouse ALK1 antibodies, anti-mouse PECAM antibodies anti-human TGF-β and anti-mouse TGF-β antibodies were purchased from R&D Systems (Minneapolis, MN). ALK1 inhibitor LDN193189 was purchased from Sigma (St. Louis, MO). PE-conjugated streptavidin was purchased from Biolegend (San Diego, CA). Dylight549-conjugated streptavidin was purchased from Abcam (Cambridge, MA). Recombinant soluble chimeric protein containing the ectodomain of human ALK1 conjugated with IgG Fc (ALK1-Fc), chimeric protein containing the ectodomain of human ALK5 conjugated with IgG Fc (ALK5-Fc) and chimeric protein containing ectodomain of human TβRII conjugated with IgG Fc (TβRII-Fc) were purchased from Sinobiological (Beijing, China).
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8

GDF11 Supplementation in Mice

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GDF11 (Peprotech, 120-11) was dissolved in water, further diluted according to the manufacturer’s instructions and injected at a concentration of 1 mg kg−1, as previously described in24 (link). Control mice (young or aged) were injected with equivalent volumes of saline. All mice were injected daily at 7 pm for the duration of the experiment. All experimental procedures were performed in accordance to the Institut Pasteur ethical committee and the French Ministry of Research (APAFiS; 16380).
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9

Neonatal Rat Ventricular Myocyte Isolation and Treatment

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Neonatal rats were purchased from Charles River Laboratories, and NRVMs were isolated using previously published techniques (45 (link)). NRVMs were serum starved for 6 hours before 18-hour treatment, unless otherwise specified. The following reagents were used: activin A (0 to 100 ng/ml: 338 AC, R&D Systems), GDF11 (100 ng/ml: 120–11, PeproTech), GDF8 (100 ng/ml: 788G8, R&D Systems), CDD866 (0 to 100 μg/ml; Novartis), MG132 (10 μM; Sigma-Aldrich), and A01 (10 μM; Sigma-Aldrich). Proteasome activity was measured using the 20S Proteasome Activity Assay (MilliporeSigma).
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10

Dose-Dependent Effects of GDF11 and GDF8 on Cardiac SMAD2 Phosphorylation

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All animal studies were performed as approved by the Harvard Committee on Animals. Adult (1-year-old) C57Bl/6 male mice were obtained from Charles River, and intravenously injected (by tail vein injection) with 0.5 mg/kg GDF11 (PeproTech) or 0.5 mg/kg, 1 mg/kg, 2 mg/kg and 4 mg/kg GDF8 (R&D Systems) or saline as control. Ligands were reconstituted in water at a concentration of 1 mg/mL and diluted in saline prior to injection. Heart tissue was collected 1 h post injection. Whole heart protein lysates were obtained by homogenizing the heart in RIPA buffer freshly supplemented with 1 mM PMSF and protein phosphatase inhibitor 2 and 3 (Sigma-Aldrich). 40 g total protein was loaded in NuPAGE 4-12% Bis-Tris gels (LifeTechnologies). Following transfer, membranes were blocked with non-fat dry milk for 1 h at room temperature and successively incubated with primary pSMAD2 antibody (Millipore, Cat. no. AB3849; Lot 2649232) and total SMAD2/3 antibody (Cell Signaling Technology, Cat. no. 8685P; Lot 4) overnight at 4 °C. Proteins were detected with horseradish peroxidase-conjugated antibodies (BioRad Laboratories; Cat. no. 172-1019; Lot L006328 A) and enhanced chemiluminescence (Amersham™ GE Healthcare, Cat. no. RPN2236).
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