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6 protocols using pd173074

1

Cerebral Organoid Generation and FGFR1 Inhibition

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Cerebral organoids were generated from hESCs (H9 and HUES8) and from human iPSCs using a modified protocol of Lancaster et al.40 (link), described in the Supplementary Methods and in Supplementary Fig. 1. Eight-day hESC (H9) cerebral organoids were treated with the FGFR1 inhibitor, PD173074 (Abcam), by adding fresh media with 100 nM PD173074 or drug-free media every 2 days for 10 days. On day 18, the cerebral organoids were harvested, fixed, and processed for immunocytochemistry.
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2

Antibody and Inhibitor Assay Protocol

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Anti-Fpr2 (GM1D6) monoclonal antibody and anti-CRAMP (anticathelin-related antimicrobial peptide) (R-170) polyclonal antibody were from Santa Cruz (Santa Cruz, CA, USA). Anti-FGFR1, antiglutamine synthetase (anti-GS) and anti-Vimentin antibodies, and an FGFR antagonist PD 173074 were from Abcam (Cambridge, UK). The Fpr2 antagonist (WRW4) was purchased from Tocris Bioscience (R&D Systems, Minneapolis, MN, USA). Mouse CRAMP (NH2-ISRLAGLLRK GGEKIGEKLKKIGQKIKNFFQ KLVPQPE-OH) was synthesized by New England Peptide LLC (Gardner, MA, USA). Mouse b-FGF was purchased from Pepro Tech (Rocky Hill, NJ, USA). Sphingosine-1-phosphate (S1P) was purchased from Cayman Chemical Company (MI, USA). Antibodies specific for total ERK1/2, ERK1/2 phosphorylated at Tyr-204, phosphor (P)-p38 MAPK, and total p38 MAPK, were purchased from Cell Signaling Technology (Beverly, MA, USA). The IκB-α inhibitor BAY 11-7082 was purchased from Selleckchem (TX, USA). fMLF was obtained from Sigma-Aldrich.
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3

Imaging live brain slices under FGF2 treatment

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Electroporated embryos were harvested and euthanized by decapitation, and the brains were quickly dissected and placed into ice-cold, oxygenated ACSF. The brains were embedded in 3.2% select agar (Sigma) in phosphate-buffered saline, and 250-μm slices were quickly made on a Leica VT1000S vibrating microtome and then placed in oxygenated ACSF to recover at room temperature for 20 min. The slices were then kept up to 24 hours in ice-cold, oxygenated ACSF until imaging. The imaging depth was a minimum of 20 μm to avoid damaged cells near the slice surface. FGF2 protein (Invitrogen), 2-APB (Sigma), and PD173074 (Abcam) were dissolved in oxygenated ACSF immediately before bath application and imaging. Movies were acquired at scan rates ranging from 1 to 0.25 Hz with 1024 × 1024 or 2048 × 2048 resolution, and the slices were imaged for up to 4 hours, after which they began to degrade.
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4

Mesothelioma Cell Culture Conditions

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Murine mesothelioma AB12 cells (Sigma-Aldrich St. Louis, MO, USA) and human mesothelioma H28 cells (#CRL-5820, American Type Culture Collection (ATCC), Manassas, VA, USA) were cultured in RPMI 1640 medium (Lonza, Verviers, Belgium) supplemented with 1% L-Glutamine, 1% penicillin-streptomycin, 25 mM HEPES and 10% fetal bovine serum (FBS) (Gibco, Paisley, UK). Human non-cancerous mesothelial Met5A cells (#CRL-9444, ATCC) were cultured in Medium 199 containing 1.5 g/L sodium bicarbonate (Gibco) supplemented with 3.3 nM EGF, 400 nM hydrocortisone, 1% penicillin-streptomycin, 20 mM HEPES and 10% FBS. Primary Mesothelioma 27 (PM27) cells, generated as described below (see ‘Primary cancerization mouse model and isolation of primary mesothelioma cells’ section), were cultured in DMEM (Gibco) supplemented with 1% L-Glutamine, 1% penicillin-streptomycin and 10% FBS. Cell cultures were incubated at 37 °C in a 5% CO2 atmosphere and routinely tested for mycoplasma contamination. GI254023X (Sigma-Aldrich) [42 (link)], ionomycin (Sigma-Aldrich) and PD173074 (Abcam, Cambridge, UK) were prepared in DMSO (vehicle). For assays in presence of GI254023X or vehicle, mesothelioma cells were pretreated 16 h before the experiment. Recombinant mouse N-cadherin/Fc Chimera Protein was reconstituted in PBS (R&D Systems, Minneapolis, USA).
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5

Purification and Characterization of FGF1

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NmFGF1 was produced in Escherichia coli and purified to be endotoxin free as previously described (Wu et al., 2005 (link)). The FGFR1-specific inhibitor PD173074 was purchased from Abcam (Cambridge, MA, USA). S1P1 antagonist VPC23019 was purchased from Cayman Chemical (Ann Arbor, MI). The primary antibodies applied in this study including anti-FGFR1 (No. ab824), anti-p-FGFR1 (No. ab59194), anti-S1P1 (No. ab11424), anti-CD31 (No. ab28364), and anti-β-Actin (No. ab8227) were purchased from Abcam (Cambridge, MA, USA), and anti-FGF1 (No. BM5544) was obtained from Bosterbio (Pleasanton, CA, USA). The secondary antibody used were goat anti-rabbit IgG H&L (HRP) (No. ab6721), and Alexa Fluor ®488-conjugated donkey anti-rabbit (No. ab150073) which were also purchased from Abcam (Cambridge, MA, USA). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-tetrazolium bromide (MTT) and S1P1 agonist FTY720 were purchased from Sigma-Aldrich (St. Louis, MO, USA). EBM-2 medium was purchased from Lonza (Hopkinton, MA, USA). Matrigel matrix was obtained from Corning Inc (Tewksbury, MA, USA). All other chemicals were of analytical-reagent grade.
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6

VEGFR Signaling Pathway Inhibitors

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PLX4720 and Lenvatinib were from Selleck. Dabrafenib was from ChemieTek. GW2580 and gefitinib were from LC Laboratories. PD173074 was from Abcam. Recombinant human VEGF, anti-human VEGF blocking mAb, phospho-VEGFR1 (Y1213), Phycoerythrin-conjugated anti-human VEGFR1, VEGFR2, VEGR3 and neuropilin-1 were from R&D Systems. phospho-ERK (pERK), pAKT, pNF-κB, pCRAF, pARF, pSTAT3, pVEGFR1, pp38, total ERK, CRAF, AKT, STAT3, PDGFRβ, Rab11, HSP90 and Vinculin (Cell Signaling). Corning Transwells (pore size, 0.4 μm) were from Fisher Scientific for co-culture experiments.
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