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3 protocols using cf488a hydrazide

1

Quantitative Sialic Acid Labeling

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Cell-surface sialic acids were labeled using aniline-catalyzed oxime ligation (41 (link)). In comparison to labeling with Sambucus nigra lectin (SNA) (Vector Laboratories), which are large and have defined preferences for specific Sia linkages, chemical labeling provides a more reproducible and quantitative measurement of cell-surface sialic acids (Fig. S5). To perform this reaction, we first prepared solution A (1 mM NaIO4 [Sigma-Aldrich] dissolved in PBS supplemented with 1 mM CaCl2) and solution B (1 mM CaCl2, 10 mM aniline [Sigma-Aldrich], 5% FBS and 100 μM CF633 hydrazide [Sigma-Aldrich], or CF488A hydrazide [Sigma-Aldrich] in cold PBS, pH 6.5 [Teknova]). The cells were cooled on ice and washed with cold PBS once before incubating with solution A on ice for 15 min, followed by a wash with cold PBS (pH 6.5) and incubation with solution B on ice for 40 min. The cells with labeled sialic acids were washed once with cold Opti-MEM, and their plasma membranes were labeled with CellMask Orange (Invitrogen) at a concentration of 2.5 μg/mL in Opti-MEM for 5 min at room temperature. The cells were washed again with Opti-MEM before imaging.
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2

Eukaryotic Protein Synthesis Regulation

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Sodium orthovanadate (S6508), EDTA (225658), dithiothreitol (DTT-D9779), N-2-hydroxyethylpiperazine-N’2-ethanesulfonic acid (Hepes-H3375), sodium fluoride (7681-49-4), p-nitrophenyl phosphate (N1891), leupeptin (L2023), aprotinin (A4529), Protease inhibitor cocktail (P8849), ATP (A6419), Tween 20 (P1379), puromycin (P8833), RNase A (55674), Acetylcholine chloride (A6625), and CF™ 488A Hydrazide (SCJ4600015) were obtained from Sigma-Aldrich (Saint-Quentin-Fallavier, France). The m7GTP-Sepharose beads (AC-151S) were purchased from Jena Bioscience, Jena, Germany. Mouse monoclonal antibody directed against rabbit eIF4E (AB_397664) was purchased from Transduction Laboratories (Lexington, KY, USA). Horseradish peroxidase-coupled secondary antibodies (P0447) were obtained from Dako SA. Pierce ECL Plus substrate (32134) was purchased from ThermoFisher Scientific (Illkirch-Graffenstaden, France).
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3

Visualizing Gelatin and aCNCs in EKGel

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To visualize the location of gelatin and aCNCs within the EKGel, we covalently labeled gelatin with rhodamine-B-isothiocyanate (RBITC) and the aCNCs with CF-488A hydrazide® (Sigma Aldrich) as described below. EKGel was prepared as described above, but aCNCs were replaced with CF-488A-labeled aCNCs, and gelatin was replaced with RBITC-labeled gelatin. Immediately after mixing, a droplet of the EKGel precursor suspension was placed on a glass slide and covered with a glass coverslip (#1.5 thickness). The samples were sealed with nail polish and incubated overnight at 37 °C to allow for complete gelation. The fluorescent EKGel samples were imaged using a Nikon AR1 confocal microscope with a 100× oil immersion lens. To image CF-488A-labeled aCNCs, a 488-nm laser was used; a 561-nm laser was used to image RBITC-labeled gelatin. The Pearson colocalization coefficient (PCC) was determined using ImageJ software.
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