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19 protocols using agilent 7890a 5975c gc ms

1

Quantification of 28 Volatile Organic Compounds

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The commercial standards of 28 VOCs were purchased from several manufacturers. Detailed information regarding the manufacturers, purities and uncertainties of the purities are given in Table 6. Pesticide residue grade methanol was purchased from J.T. Baker, USA. The stock standard solutions were 27 mixed VOCs standard solution (IRMM, 100 µg/mL) and vinyl chloride standard solution (2000 µg/mL, Supelo, USA). The internal stock standard solutions were fluorobenzene and 1,4-dichlorobenzene D4 (IRMM, 1000 and 1000 µg/mL, respectively).
The VOCs spiking solution was prepared gravimetrically using a calibrated Mettler Toledo analytical balance (AE-240, 205 g capacity, resolution of 0.01 mg, Switzerland). The purities of the 28 VOC commercial standards were verified by a calibrated gas chromatography with flame ionization detection (Agilent 7890A GC-FID, USA). Homogeneity and stability studies of VOCs spiking solution were performed on a calibrated Agilent 7890A gas chromatograph coupled with an Agilent 5975C mass spectrometer (Agilent 7890A GC-5975C MS, USA). Analysis of the water MCRM was performed on a calibrated purge-and-trap Agilent 7890A GC-5975C MS.
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2

GC-MS-O Analysis of Volatile Compounds

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An Agilent 5975C‐7890A GC‐MS (Agilent Technologies) was equipped with an olfactory detection port Gerstel ODP‐2 (Gerstel AG Enterprise). The GC was fitted with HP‐INNOWAX column (60 m × 0.25 mm × 0.25 µm; Agilent). The oven temperature was programmed from 40°C and the initial temperature was 1 min and increased to 230ºC at 5ºC/min and then kept for 3 min, and the high‐purity nitrogen was used as the carrier gas at 1.8 ml/min. The temperature of the injector port was 250°C, and 0.5 µl of each sample was injected into the GC‐MS‐O system. Each GC‐O experiment was evaluated by three panelists (two females and one male). All the panelists were trained for 30 hr over a period of 3 weeks. The aroma character of volatile compounds was evaluated by sniffing, and intensity of the volatile compounds was marked with five scales (“1” mean extremely weak, “3” impress medium odor, “5” mean extremely strong; Sheibani et al., 2016a). These volatile compounds were identified by matching their RI values with standards.
The aroma intensity was based on the aroma character of GC‐O as well as the sensory evaluation.
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3

Olfactory Analysis of Volatile Compounds using GC-MS-O

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An Agilent 5975C-7890A GC-MS (Agilent Technologies, Palo Alto, CA, USA) was equipped with an olfactory detection port Gerstel ODP-2 (Gerstel AG Enterprise, Mülheim an der Ruhr, Germany). The GC was fitted with HP-INNOWAX column (60 m × 0.25 mm × 0.25 μm, Agilent, Palo Alto, CA, USA). 0.5 µL of the sample was injected into the GC-MS-O system in a splitless mode. The oven temperature was started at 40 °C for 1 min, and increased in a rate of 5 °C/min to 230 °C and then kept for 3 min. High purity nitrogen was used as the carrier gas at 1.8 mL/min. Temperature of the injector port was 250 °C.
GC-MS-O experiment was performed by three panelists (two females and one male). All the panelists were trained for 30 h over a period of 3 weeks using a series of standards solutions, so as to recognize, describe and discriminate the odors of different compounds. Each volatile was recorded with the retention time (RT), sniffed aroma attribute and the aroma intensity (AI). The AI was ranked in five levels, where “1” means extremely weak, “3” impresses medium, “5” means extremely strong [40 (link)]. The odorants were detected by at least two panelists were recorded. The experiment was replicated in triplicate by each panelist, and the AI was averaged.
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4

GC-MS Analysis of Rhubarb-Containing Herbal Extract

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Referring to the previous study [41 (link)], we optimized the analysis conditions as follows. GC-MS analysis of the RALO was performed by using Agilent GC–MS (7890A-5975C, Agilent, Santa Clara, CA, USA) with an MS capillary column (HP-5, Agilent,, Santa Clara, CA, USA, 30 m × 0.25 mm × 0.25 µm). The injection volume was 1 µL with a 100:1 (v/v) ratio split mode. The carrier gas was helium (99.999% purity, 1 mL·min−1). The temperature of the injector and interface was set to 250 °C and 280 °C, respectively. A programmed temperature rise was adopted with an initial column temperature of 100 °C, rising to 135 °C at 10 °C·min−1, then to 145 °C at 0.5 °C·min−1 and holding for 6 min, and to 250 °C at 5 °C·min−1 and holding for 8 min. The mass spectrometer was operated at 70 ev in full scan mode. The compounds in RALO were identified through the NIST14 database. The area normalisation method calculated the relative content of each compound in the chromatogram.
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5

GC-MS Analysis of Volatile Compounds

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A GC-MS analysis was performed by a previously reported method with slight modifications [65 (link)]. Briefly, two μL aliquot of freeze-dried and concentrated BRARP extract in chloroform and methanol was analyzed by an Agilent GC-MS 7890A, 5975C (Agilent, USA) to identify the volatile compounds. The column used was HP DB-5 capillary column (30×0.25 mm×0.25 μm; Agilent Technologies). GC oven initial temperature was 50°C for 2 min and programmed to 280°C at a rate of 5°C.min-1, and finally held at 280°C for 2 min. Operating conditions for GC as follows: hydrogen was used as carrier gas (5 mL.min-1); the temperature of injector and detector was 250°C and 280°C, respectively; the volume injected was 2 μL in split mode (10: 1). The mass spectra were performed at 70 eV of the mass range of 50∼400.
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6

Lipid Profiling of Pear Exocarp

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Two grams of pear exocarp was subjected to cellulase and pectinase for hydrolysis. The samples were dried at 50°C. After extraction, the solids were cleaned with acetone. After drying, soluble lipids were removed with organic solvent extraction, and a methanol solution containing 14% BF3 (trifluoro(methanol)boron, CH4BF3O) was used for depolymerization for 2 h to obtain the final lipid components. The final lipid components were extracted with chloroform. Then, triacontane (100 μg) was added as an internal standard. The derivatization process was conducted by the addition of 150 μl N, O-bis-(trimethylsilyl) trifluoroacetamide (BSTFA) at 70°C for 40 min. Residues were prepared for gas chromatography-mass (GC–MS) analysis via an Agilent 7890A GC/5975C MS.
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7

Photocatalytic Measurement of ZCS/GO

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Photocatalytic measurements were performed using an online detection system (Lab solar III‐AG, Beijing Perfect Light Technology Co. Ltd., China) connected to a gas chromatograph (Techcomp, GC7900). Herein, 5 mg ZCS/GO photocatalyst, 0.5 mL ethanediol, 0.5 mL p‐xylene, and 20 mL H2O were mixed for reactions. A 300 W Xe lamp (wavelength: 350–780 nm) was used as a light source and placed 15 cm away from the liquid level. The reaction temperature was controlled below 40 °C by cycling water. Products in the liquid phase were achieved hourly and identified by GC–MS (Agilent 7890A GC–5975C MS).
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8

GC-MS Analysis of Fecal Metabolites in Sows

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The metabolites concentrations were evaluated with GC-MS in sows fecal samples. In accordance with He et al. [1 (link)], 100 mg of fresh fecal sample was transferred to 5- mLcentrifuge tubes, mixed with 500 µL distilled water, and was vortexed for 60 s. Then, 1000 μL methanol was added to be an internal quantitative standard and vortexed for 30 s. The ultrasound machine was used to hold samples at 25 °C for 10 min, then the centrifuge process (5000 r/min; 5 °C; 15 min) was performed after 30 min incubation on ice. All the supernatants were placed in 2 mL centrifuge tubes and dried. Then, the dried samples were mixed with 60 μL of methoxyamine solution in pyridine and vortexed (30 s) to be reacted for 120 min at 37 °C. A 60 μL trifluoroacetamide reagent (containing 1% FMCS) was added for 90 min (37 °C) and centrifuged (5000 r/min; 5 °C; 15 min). The produced supernatant was moved to a sample bottle to be analyzed by Agilent 7890A/5975C GC-MS (Agilent Technologies, Santa Clara, CA, USA).
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9

Fecal Metabolic Profiling by GC-MS

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Metabolic profiling of fecal samples was acquired by an Agilent 7890 A/5975C GC-MS (Agilent Technologies, Santa Clara, CA, USA). Separation was performed by using a 30 m × 0.25 mm × 0.25 μm HP-5MS fused silica capillary column (Agilent J&W Scientific). The sample injection volume was 1 μL with a split ratio of 10:1. The injector, ion source and quadrupole rod temperatures were 280 °C, 230 °C and 150 °C respectively. The flow rate of the carrier gas, high-purity helium (>99.999%), was 1.2 mL/min. The GC oven temperature program consisted of 80 °C for 2 min, after which the temperature ramped to 330 °C at 10 °C/min, and held steady for 6 min. Mass spectra were acquired at ascan speed of 2 spectra per second after a solvent delay of 4.8 min, and the mass scan range was set at m/z 50–550. Fecal samples were analyzed randomly.
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10

Quantitative Analysis of Fecal Short-Chain Fatty Acids

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Short-chain fatty acids were detected according to the method of Fan et al. (2020 (link)). Briefly, acetic acid and propionic acid were measured by propyl chloroformate (PCF) derivatization followed by gas chromatography–mass spectrometry (GC-MS) (Zheng et al., 2013 (link)). Approximately, 0.1 g of each ~fecal sample was added to 1,000 μL of 0.005 M NaOH containing 5 μg/mL caproic acid–d3 internal standard (IS) and the suspension was homogenized. Then 500 μL of supernatant aliquot was transferred to a 15-mL capped centrifuge tube. Then 300 μL ultrapure water, 100 μL PCF, and 500 μL PrOH/Py solution (3:2, v/v) were added to the supernatant and the mixture was vortexed for 30 min. The derivatization included two extractions. In the first, 300 μL hexane was added to the mixture which was then vortexed for 1 min and centrifuged at 3,000 × g for 5 min. In the second, 200 μL hexane was added and 500 μL derivatized extract was collected in an autosampler vial and analyzed with an Agilent 7890A/5975C GC-MS (MSD; Agilent Technologies, Santa Clara, CA, USA).
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