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27 protocols using jms t100lp

1

Analytical Techniques for Chemical Characterization

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1H-NMR spectra were measured using a Varian 400 or 500 FT-NMR instrument operating at 400 and 500 MHz, respectively, with tetramethylsilane as an internal standard (δ=0.00) in CDCl3 or DMSO-d6. MALDI-TOF-MS spectra were recorded using a Shimadzu AXIMA-CFE Plus instrument. ESI-TOF-MS spectra were recorded using a JEOL JMS-T100LP instrument. Luminescence was measured using Tecan M200. Column chromatography was performed using a Merck Silica gel 60. C60 (99.95+%) was purchased from MTR Ltd. Dimethyl sulfoxide was purchased from Aldrich chemical Co. K562 and K562/ADM were provided by National Institutes of Biomedical Innovation, Health and Nutrition. NIH:OVACR-3 was provided by ATCC. A549, HepG2 and HeLa was provided by the RIKEN BRC through the National Bio-Resource Project of the MEXT, Japan. RPMI-1640 medium, DMEM medium (low glucose) and the penicillin-streptomycin solution were purchased from Sigma Inc. Heart-inactivated fatal bovine serum was purchased from Life Technologies Co. MEM medium, MEM NEAA and DMEM medium (high glucose, HEPES, no phenol red) were purchased form ThermoFisher Scientific. Other chemicals used were of the highest quality commercially available.
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2

Characterization of Synthesized Compounds

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The compounds were synthesized according
to Figure 1a. 1H NMR spectra were recorded on a JNM-ECX400P or JMN-ECS400
(JEOL Ltd., Tokyo, Japan) instrument at 400 MHz and are reported relative
to deuterated solvent signals (Figures S12–S15). ESI and MALDI-TOF mass spectra were recorded on a JMS-T100LP (JEOL
Ltd.) or an Ultraflex II TOF/TOF (Bruker Japan K.K., Kanagawa, Japan)
instrument, respectively.
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3

Synthesis and Characterization of Radiolabeled Peptides

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[185/187Re(CO)3(OH2)3]Br (19),23 (link) Boc-Gly-Gly-OH (1),10 (link) CN-βAla-TFP (7a),10 (link) CN-βAla-Gly-Gly-c(RGDfK) (Lβ)10 (link) and H2N-Gly-Gly-c(RGDfK)·CF3CO2H (15)10 (link) were synthesized according to the previous reports. Technetium-99m as Na99mTcO4 was eluted in saline solution on daily basis from a 99Mo/99mTc generator (FUJIFILM RI Pharma Co., Ltd., Tokyo, Japan). All other reagents were purchased from Wako Pure Chemical Industries, Ltd. (Tokyo, Japan) and were used without further purification. Mass spectrometry was carried out using a JMS-T100LP (JEOL Ltd., Tokyo, Japan) or an Agilent 6130 Series Quadrupole LC/MS spectrometer (Agilent technologies, Tokyo). 1H NMR/13C NMR spectra was recorded on a JEOL ECS-400 (400 MHz/100 MHz, respectively) spectrometer (JEOL Ltd, Tokyo). Infrared (IR) spectra were recorded on a FT/IR-4700 (Jasco Co., Tokyo, Japan).
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4

Characterization of Porous Chitosan-Silane Hybrids

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The porous hybrids were prepared using the freeze-drying method [17 (link)]. We used a planetary centrifuge (ARE-310, Thinky, Tokyo, Japan) at 2000 rpm (Program: MIX 5 min − DEFOAM 3 min) × 3, MIX 5 min) to yield the chitosan solution and mixtures with GPTMS.
The compositions were chitosan:GPTMS = 1:0.5 and 1:1 as the molar ratios, named ChG05 and ChG10, respectively. The obtained porous hybrids were cut into a square (10 mm × 10 mm, thickness = 2 mm) and sterilized with ethylene oxide gas (20% CAPOX, 45 °C, 50% humidity, Steri-Tech Inc., Saitama, Japan). Square specimens were soaked (0.3 mm3/mL) in ultrapure water (Life Technologies, Carlsbad, CA, USA) at 37 °C for 1 week. Extractions were filtered using a syringe filter (0.22 µm pore size) before the following analysis. The amount of Si(IV) and molecular weight of the degradation products in the extractions were measured using inductively coupled plasma emission spectrometry (ICP, ICPS-8000, Shimazu Corporation, Kyoto, Japan) and electron spray ionization TOF-MS spectrometry (JMS-T100LP, JEOL, Tokyo, Japan) [20 (link)]. The free amino groups in the extractions were measured using the ninhydrin method [21 (link)].
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5

Analytical Methods for Characterization

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Optical rotations were recorded on a JASCO P-1020 polarimeter. NMR spectra were recorded on JEOL ECP600 and ECZ600 spectrometers in a deuterated solvent whose chemical shift was taken as an internal standard. ESI-MS were obtained on a JEOL JMS-T100LP. Silica gel 60 N (Kanto Chemical Co., Inc., Tokyo, Japan), Chromatorex ODS and Chromatorex PSQ100B (Fuji Silysia Chemical Ltd., Kasugai, Japan) were used for column chromatography. Luna Phenyl-Hexyl (φ 10 × 250 mm) (Phenomenex Torrance, CA) was used for Preparative HPLC. Nano Drop 2000 spectrophotometer (Thermo Fisher Scientific Inc., Waltham, USA) was used for protein concentrations measurement.
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6

Photophysical Properties of Eu(III) and Gd(III) Complexes

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1H-NMR spectra were recorded in CDCl3 on a JEOL ECS-400 (400 MHz) spectrometer; tetramethylsilane was used as the internal reference. Electron ionization (EI) and electrospray ionization (ESI) mass spectrometry were performed using JEOL JMS-T100 GCv and JEOL JMS-T100 LP instruments, respectively. Elemental analyses were performed using MICRO CORDER JM10. UV-vis absorption spectra for ligand 1 and Eu(III) complex 2 were measured using a JASCO V-670 spectrophotometer. Emission spectrum, excitation spectrum, and emission lifetime for Eu(III) complex 2 were measured using a Horiba FluoroLog®3 spectrofluorometer. Emission spectrum and lifetime for Gd(III) complex 5 were measured using a FP-6300 spectrofluorometer with a nitrogen bath cryostat (Oxford Instruments, Optistat DN) and a temperature controller (Oxford Instruments ITC-502S). Emission spectrum for the ligand 1 was measured using a FP-6300 spectrofluorometer with a nitrogen bath cryostat (Oxford Instruments, Optistat DN) and a temperature controller (Oxford Instruments ITC-502S). Emission quantum yield for Eu(III) complex 2 was measured using a FP-6300 spectrofluorometer with an integration sphere (ILF-533).
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7

Amino Acid Derivatization Kinetics

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Aliquots containing 5 μL of an amino acid mixture including Tau, (S)-glutamate, (S)-glutamine, (S)-arginine, and (S)-valine (each 100 µM) in phosphate-buffered saline (PBS) were added to 5 μL of 20 mM Ns-MOK-(S)-Pro-OSu in CH3CN or 20 mM Ns-MOK-(S)-β-Pro-OSu in CH3CN, and 5 μL of 10 mM DMAP in CH3CN. The solutions were allowed to react at room temperature for 5, 15, 30, 60, 90, and 120 min. Each reacted solution was diluted with 35 μL of 0.2% HCO2H in H2O/MeOH (1:1, v/v) and subjected to LC-TOF-MS (JMS-T100LP, JEOL Ltd., Tokyo, Japan) (Supplementary Materials, Section 2.2). The observed peak areas were plotted against the derivatization times.
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8

Analytical Methods for Compound Identification

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Unless otherwise noted, reagents and solvents were purchased at the highest commercial quality and used without further purification. LC-UV analysis was carried out with Agilent 1100 system (Agilent Technology, Inc.) under the following condition; column, Symmetry C18 (Waters Co., Ltd., 2.1 φ × 150 mm); UV detection, 210 nm; flow rate, 0.2 mL/min; mobile phase, MeCN-H2O with 0.05% H3PO4, (5–100% linear gradient over 20 min). ODS column chromatography was carried out with Sep-Pak® Plus C18 Short Cartridge (Waters Co., Ltd.) or CHROMATOREX® (Fuji Silysia Chemical, Ltd.). 1H NMR spectra were recorded on JEOL JNM-ECA-500 (500 MHz) and 13C NMR spectra were recorded on JEOL JNM-ECA-500 (125 MHz). Chemical shifts are expressed in ppm downfield from the internal solvent peaks for CD3OD (1H; δ = 3.31 ppm,13C; δ = 49.0 ppm) and J values are given in Hertz. The following abbreviations were used to explain the multiplicities: s = singlet, d = doublet, and br = broad. High- and Low-resolution mass spectra were measured on JEOL JMS-AX505 HA, JEOL JMS-700 MStation and JEOL JMS-T100LP.
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9

In-Source CID Mass Spectrometry of Au11 Clusters

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The
CID mass spectra were measured by using a JMS-T100LP (JEOL Ltd.) spectrometer
composed of an ESI source, an in-source CID assembly (Figure S8), and a TOF mass spectrometer. Acetonitrile
dispersion of the Au11 clusters (∼0.1 mg/mL) was
supplied to the ESI source at a flow rate of ∼2 mL/h. The pressure
of the region where CID occurred was ∼200 Pa. Voltage applied
to an electrode in the in-source CID assembly (CID voltage) was adjusted
within the range of 80–250 V (Figure S8). Under the above conditions, the collision energy of the ions with
a background gas (N2 in the nebulizer, the atmospheric
molecules, and the solvent) is expected to be higher than that in
the TID and increases with the CID voltage.
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10

Spectroscopic Analysis of Organic Compounds

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Optical rotations were measured on a JASCO DIP-1000 polarimeter. UV spectra were recorded on a Shimadzu UVmini-1240 spectrophotometer and IR spectra on a JASCO FT/IR-4100 spectrophotometer. High-resolution ESI MS were obtained on a JMS-T100LP (JEOL). 1H and 2D NMR spectra were measured on a 400 MHz or 600 MHz spectrometer at 300 K, while 13C NMR spectra were on a 100 MHz or 150 MHz spectrometer. The residual solvent peaks were used as internal standards (δH 7.26 and δC 77.0 for CDCl3, δH 3.31 and δC 49.0 for CD3OD).
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