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Hoechst 333242

Manufactured by Thermo Fisher Scientific

Hoechst 333242 is a fluorescent dye used for nucleic acid staining. It specifically binds to AT-rich regions of DNA, causing it to emit fluorescence when exposed to ultraviolet light.

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5 protocols using hoechst 333242

1

Nucleoside Uptake and Nucleolar Localization

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Coverslips in 6-well tissue culture plates were treated with 1× poly-D lysine (Corning) solution for 3 h at 37 °C. HEK293T cells were seeded at densities of 2.5×105 and grown to ~50% confluency on glass cover slips. Cells with or without ectopic expression of UCK2 were treated with nucleosides to final concentrations of 500 μM and incubated for 5 hours. After labeling, cells were washed twice with DPBS and fixed for 10 min at room temperature with 3.7% paraformaldehyde. Cells were quenched with 50 mM glycine, DPBS for 5 min, and then washed twice more. Cells were permeabilized in 0.1% Triton-X DPBS for 30 min, and then washed ×2 with DPBS. HEK293T cells were blocked with 10% goat serum/DPSB for 2 h. Cells were than incubated with 1:500 anti-NPM1 (anti-B23; Sigma Aldrich) in 1% BSA/DPBS overnight at 4 °C, followed by washing ×3 with DPBS. Cells were then incubated with 1:1000 anti-rabbit Alexa 647 (Fisher Scientific) in 1% BSA/DPBS for 1 h in the dark at room temperature. Cells were stained with a solution of 1:3000 Hoechst 333242 for 10 min (Thermo Fisher Scientific). Coverslips were briefly washed and then mounted using VectaShield mounting medium (Vector Labs). Slides were imaged via fluorescence confocal microscopy using a 63× oil immersion objective on a Leica 700 Carl Zeiss microscope.
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2

Nucleoside Uptake and Nucleolar Localization

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Coverslips in 6-well tissue culture plates were treated with 1× poly-D lysine (Corning) solution for 3 h at 37 °C. HEK293T cells were seeded at densities of 2.5×105 and grown to ~50% confluency on glass cover slips. Cells with or without ectopic expression of UCK2 were treated with nucleosides to final concentrations of 500 μM and incubated for 5 hours. After labeling, cells were washed twice with DPBS and fixed for 10 min at room temperature with 3.7% paraformaldehyde. Cells were quenched with 50 mM glycine, DPBS for 5 min, and then washed twice more. Cells were permeabilized in 0.1% Triton-X DPBS for 30 min, and then washed ×2 with DPBS. HEK293T cells were blocked with 10% goat serum/DPSB for 2 h. Cells were than incubated with 1:500 anti-NPM1 (anti-B23; Sigma Aldrich) in 1% BSA/DPBS overnight at 4 °C, followed by washing ×3 with DPBS. Cells were then incubated with 1:1000 anti-rabbit Alexa 647 (Fisher Scientific) in 1% BSA/DPBS for 1 h in the dark at room temperature. Cells were stained with a solution of 1:3000 Hoechst 333242 for 10 min (Thermo Fisher Scientific). Coverslips were briefly washed and then mounted using VectaShield mounting medium (Vector Labs). Slides were imaged via fluorescence confocal microscopy using a 63× oil immersion objective on a Leica 700 Carl Zeiss microscope.
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3

Clickable Nucleoside Incorporation Assay

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Coverslips in 6-well tissue culture plates were treated with 1× poly-D lysine (Corning) solution for 3 h at 37 °C. HEK293T cells were seeded at densities of 2.5×105 and grown to ~50% confluency on glass cover slips. Cells with or without ectopic expression of UCK2 were treated with nucleosides to final concentrations of 1 mM and incubated for 5 hours. After labeling, cells were washed twice with DPBS and fixed for 10 min at room temperature with 3.7% paraformaldehyde. Cells were quenched with 50 mM glycine, DPBS for 5 min, and then washed twice more. Cells were permeabilized in 0.1% Triton-X DPBS for 15 min, and then washed ×2 with DPBS. Cells were then treated with solutions containing 500 μM CuSO4, 2.5 mM THPTA (Sigma), 2.5 mM sodium ascorbate, and 15 μM Alexa-Fluor 568 (Click Chemistry Tools) and incubated at room temperature for 1 h in the dark. Cells were washed ×2 with 0.1% Triton-X DPSB for 2 min, and then ×5 with DPBS for 5 min each on an orbital shaker. Cells were stained with a solution of 1:3000 Hoechst 333242 for 10 min (Thermo Fisher). Coverslips were briefly washed and then mounted using VectaShield mounting medium (Vector Labs). Slides were imaged via fluorescence confocal microscopy using a 63× oil immersion objective on a Leica 700 Carl Zeiss microscope.
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4

Fluorescent Labeling of Vinyl Nucleosides in HEK293T Cells

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Coverslips in 6-well tissue culture plates were treated with 1x poly-D lysine solution for 3 h at 37 °C. HEK293T cells were seeded at densities of 2.5×105 and grown to ~50% confluency on glass cover slips. Cells were treated with vinyl nucleosides to final concentrations of 1 mM and incubated for 5 h. After labeling, cells were washed twice with DPBS and fixed for 10 min at room temperature with 3.7% paraformaldehyde. Cells were quenched with 50 mM glycine, DPBS for 5 min, and then washed twice more. Cells were permeabilized in 0.5% Triton-X DPBS for 15 min, and then washed x2 with DPBS. Cells were then treated with solutions of 5 μM Tz-3 TAMRA in DPBS (6% DMSO:AcOH (pH 5.0)), and incubated for 3 h at 37 °C in the dark. Cells were washed x2 with 0.25% Triton-X DPSB for 5 min, and then x5 with DPBS for 5 min each on an orbital shaker. Cells were stained with a solution of 1:3000 Hoechst 333242 for 10 min (Thermo Fisher). Coverslips were briefly washed and then mounted using VectaShield mounting medium (Vector Labs). Slides were imaged via fluorescence confocal microscopy using a 63x oil immersion objective on a Leica 700 Carl Zeiss microscope.
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5

Clickable Nucleoside Incorporation Assay

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Coverslips in 6-well tissue culture plates were treated with 1× poly-D lysine (Corning) solution for 3 h at 37 °C. HEK293T cells were seeded at densities of 2.5×105 and grown to ~50% confluency on glass cover slips. Cells with or without ectopic expression of UCK2 were treated with nucleosides to final concentrations of 1 mM and incubated for 5 hours. After labeling, cells were washed twice with DPBS and fixed for 10 min at room temperature with 3.7% paraformaldehyde. Cells were quenched with 50 mM glycine, DPBS for 5 min, and then washed twice more. Cells were permeabilized in 0.1% Triton-X DPBS for 15 min, and then washed ×2 with DPBS. Cells were then treated with solutions containing 500 μM CuSO4, 2.5 mM THPTA (Sigma), 2.5 mM sodium ascorbate, and 15 μM Alexa-Fluor 568 (Click Chemistry Tools) and incubated at room temperature for 1 h in the dark. Cells were washed ×2 with 0.1% Triton-X DPSB for 2 min, and then ×5 with DPBS for 5 min each on an orbital shaker. Cells were stained with a solution of 1:3000 Hoechst 333242 for 10 min (Thermo Fisher). Coverslips were briefly washed and then mounted using VectaShield mounting medium (Vector Labs). Slides were imaged via fluorescence confocal microscopy using a 63× oil immersion objective on a Leica 700 Carl Zeiss microscope.
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