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13 protocols using frax597

1

Pharmacological Modulation of Cellular Pathways

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For treatments with different small molecules, the following concentrations were used:
10 µM nutlin-3a (Biomol, Plymouth Meeting, PA, USA),
10 mM cycloheximide (CHX; Caymen Chem, 14126).
10 µM MG132 (Calbiochem, 474790).
20 nM to 1 µM FRAX597 (Selleckchem, S7271).
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2

Measuring Cellular Viability with ATP Assay

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ATP-based measurements of cellular viability were performed by plating cells in 200 μL of media in 96-well plates. The number of cells and biological replicates seeded varied depending on the cell line and the duration of the experiment. At the indicated times, 40 μL of CellTiter-Glo reagent (Promega) was added to each well, mixed for 5 min, after which the luminescence was measured on the SpectraMax M5 Luminometer (Molecular Devices). For the drug treatment experiments, FRAX-597, Ruxolitinib, and Selumetinib were obtained from Selleckchem and Quizartinib from LC Laboratories.
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3

Evaluating PAK1 Inhibitor Efficacy

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The PAK1 small‐molecule inhibitor FRAX‐597 (S7271) was purchased from Selleck Chemicals (Houston, TX, USA), and G‐5555 (HY‐19635) was purchased from MedChemExpress, LLC (Monmouth Junction, NJ, USA). DMSO was used as a vehicle control. For drug efficacy evaluation, 1 µm of FRAX‐597 or G‐5555 was incubated with the cell lines for 3 h. For migration assays, 1 µm of each drug was incubated with the starved cells before the assay. Migrated cells were stained and counted after 3 h of incubation.
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4

Endothelial Cell Responses to NETs

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HUVECs (PCS-100-013, ATCC) were grown in endothelial growth medium 2 (comprising endothelial basal medium 2 with growth factors and other supplements) with 2% fetal bovine serum. The cells were then incubated with neutrophils (control group), NETs (NETs group), NETs treated with 0.1 mg/ml DNase I (InvivoGen, San Diego, CA, USA), NETs and TLR9 antagonist (ODN 2088, San Diego, CA, USA), NETs and PAK2 inhibitor (FRAX597, Selleck Chemicals, Houston, TX, USA), and NETs and Hippo pathway inhibitor (XMU-MP-1, Selleck Chemicals, Houston, TX, USA) for 12 h at 37℃ under 5% CO2. Then the cells were fixed with 10% polyformaldehyde for immunofluorescence analysis. Cell lysates were collected for Western blotting.
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5

Exosome-mediated Endothelial Tube Formation

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Endothelial cell tube formation assays were performed as previously described [42 (link)]. Briefly, 2F-2B and HUVEC (7 × 104 cells/well) were re-suspended in DMEM + 5% FBS, and seeded onto growth factor-reduced BD matrigel (1 mg/ml) (96-well) for 1 h. Cells were then supplemented for 2 h with MDCK, MDCKYBX1 or 21D1 Exos (30 μg), or the vehicle control (DMEM). For inhibitor based tube formation assays, 2F-2B and HUVEC cells (7 × 104 cells/well) were pre-treated with Rac1 inhibitors: 1 μM FRAX597 (Selleck Chem) and 1 μM PF-3758309 (Selleck Chem) for 1 h. Cells were isolated (480 x g. 5 min) and re-suspended in DMEM + 5% FBS, and seeded onto growth factor-reduced BD matrigel (1 mg/ml) (96-well) for 1 h. Cells were then supplemented with MDCK, MDCKYBX1 or 21D1 Exos (30 μg), or the vehicle control (DMEM). Tube-like structures were imaged using Nikon Eclipse TE300 microscope.
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6

miR-185-5p Regulation of Cardiac FAF

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FAF‐overexpressing adenovirus vector (Adv‐FAF), adenovirus containing FAF siRNA (5'‐GCAGUUUCUCUUUCAUUCUTT‐3’) and corresponding control vectors with the enhanced green fluorescent protein (EGFP) were synthesized by GeneChem (Shanghai, China). The PAK2 inhibitor FRAX597 (C29H28ClN7OS; M.W. 558.10) was synthesized by Selleckchem (Houston, USA) and used at 5 µM for 12 hours. PAK2 expression plasmid and control vector were synthesized by GeneChem (Shanghai, China). miR‐185‐5p mimic (5'‐UGGAGAGAAAGGCAGUUCCUGA‐3’) and inhibitor (5'‐UCAGGAACUGCCUUUCUCUCCA‐3’) were acquired from RiboBio (Guangzhou, China) to alter miR‐185‐5p expression in vitro. NRCM were transfected with Adv‐FAF, si‐FAF, OE‐PAK2, miR‐185‐5p mimics and inhibitors, respectively, for 12 hours following the recommendations from the manufacturer.
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7

Doxycycline-EGF-Verteporfin Combination Protocol

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Doxycycline (2µg/mL), hEGF (5ng/mL) and verteporfin were from Sigma. AZD6244 was from AstraZeneca. FRAX597 was from Selleckchem.
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8

Transgenic Lines for Zebrafish Heart Regeneration

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Transgenic lines used in this study include Tg(cmlc2:EGFP) (Huang et al., 2003 (link)), Tg(cmlc2:nDsRed) (Mably et al., 2003 (link)), Tg(hsp70:wnt8a) (Ueno et al., 2007 (link)), Tg(hsp70:dkk1b) (Ueno et al., 2007 (link)), Tg(dkk1b:EGFP) (Kang et al., 2013 (link)), Tg(tcf21:nEGFP) (Wang et al., 2011 (link)), Tg(fli1a:EGFP) (Lawson and Weinstein, 2002 (link)), and Tg(cmlc2:TetON-3G, cryaa:mCherry). Experimental procedures involving animals were advised and approved by the Institutional Animal Care and Use Committee at Fudan University. CDMG1, FRAX597, and FRAX486 (Selleck) were dissolved in DMSO to a 10 mM stock solution. BIO (Sigma) and CHIR99021 (Sigma) were dissolved in DMSO to 1 and 5 mM stock solutions, respectively. Adult transgenic TRE3G:ctnnb2(S675E)CMi fish were daily treated with 50 mg/L DOX (Sigma) over the window of heart regeneration.
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9

Evaluation of Small Molecule Inhibitors

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The drugs employed in this study were as follows: dabrafenib (ApexBio, B1407‐50); XL888 (ApexBio, A4388‐25); fludarabine (Selleckchem, S1491); CHIR‐99021 HCl (CT99021) (Selleckchem, S2924); palbociclib (ApexBio, A8316); LDC000067 (ApexBio, B4754‐10); Ro 3306 (ApexBio, A8885‐10); roscovitine (ApexBio, A1723‐10); K03861 (Selleckchem, S8100); CHIR‐99021 (Selleckchem, S2924); dinaciclib (Selleckchem, S2768); FRAX597 (Selleckchem, S7271); PF‐3758309 (Selleckchem, S7094); AUY922 (Selleckchem, S1069); BIIB021 (Selleckchem, S1175); novobiocin (Selleckchem, S2492); 17‐DMAG (Selleckchem, S1142). All the drugs were dissolved in DMSO (Sigma D2650).
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10

Inhibitor Screening and Cell Viability

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AZD4547, AZD5363, BGJ398, FRAX597 and IPA3 were purchased from Selleckchem, USA. For the MTS cell-viability assay, cell lines were seeded at appropriate density in 96-well plates for 24 h and then treated with either DMSO or inhibitor for 96 h in 5% CO2 at 37 °C. Viability was measured by adding 20 µL per well of cell titer Aqueous One solution (Promega, Walldorf, Germany) for 2.5 h in 5% CO2 at 37 °C. Absorbance was detected at 660 nm wavelength with a TECAN 200 M pro (TECAN, Zuerich, Switzerland). For counting of viable cells, cells were treated with either DMSO or inhibitor for the appropriate time, whereafter they were detached and counted by using a Guava Muse cell analyzer (Luminex, USA); counting was based on cell size and nucleation status.
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