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7 protocols using prdm16

1

Adipocyte Differentiation Signaling Assay

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DMEM, fetal bovine serum (FBS), bovine serum (BS), and trypsin-EDTA were purchased from ThermoFisher Scientific (United States). Penicillin (10000 units/ml)- streptomycin (10 mg/ml) solution was purchased from Biological Industries (Israel). Nigericin, benzoylbenzoyl-ATP (BzATP), and A438079 were purchased from Sigma-Aldrich (United States). Primary antibodies against β-actin, P2X7, PPARγ, C/EBPα, PRDM16, UCP1, PGC-1α, and horseradish peroxidase-conjugated anti-goat IgG secondary antibody were purchased from Santa Cruz Biotechnology, Inc. (United States). Primary antibodies against SIRT3, SIRT5, phospho-insulin receptor (IR), IR, phospho-insulin receptor substrate 1 (IRS-1), IRS-1, phospho-Akt, Akt, and peroxidase-conjugated anti-rabbit/mouse IgG secondary antibody were purchased from Cell Signaling Technology, Inc (United States).
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2

Western Blotting of Key Protein Markers

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Protein samples were extracted using ice-cold RIPA buffer (Thermo Scientific), supplemented with protease inhibitor and phosphatase inhibitor (Roche) when necessary. 20–40 μg of protein were fractionated by SDS-PAGE gel, transferred to PVDF membranes (Millipore) and blocked in 5% non-fat milk-PBS. Primary and HRP-conjugated secondary antibodies were applied followed by enhanced chemiluminescence substrate (Supersignal, Thermo Sci.) for detection. The antibody dilutions used were: SRF 1:2,000 (Santa Cruz, sc-13029), HSP90 1:2,000 (Cell signal, #4874), MRTF-A 1:500 (Sigma, HPA030782), MRTF-B 1:500 (Bethyl Lab., A302–768A), Vinculin 1:10,000 (Millipore, FAK100), C/EBPα 1:1,000 (Santa Cruz, sc-61), C/EBPβ 1:1,000 (Santa Cruz, sc-150), PRDM16 1:500 (Santa Cruz, sc-130243), GAPDH 1:50,000 (Millipore, MAB374), aP2 (R&D, AF1443), UCP1 1:500 (Millipore, AB3038), Smads 1:1,000 (Cell Signaling, #9963), α-SMA 1:1,000 (A5228, Sigma), α-tubulin 1:1,000 (Santa Cruz, sc-8035), TBP (Santa Cruz, sc-204).
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3

Adipose Tissue Protein Profiling

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Hypothalami, epididymal fats, and liver tissues (n = 6/group) were isolated, and proteins extracted using the commercial Tissue Protein Extraction Reagents (T-PER, Pierce Biotechnology, Rockford, IL, USA). Equal amounts of proteins were resolved by SDS-PAGE, before being transferred to the polyvinylidine fluoride membrane. The membranes were blocked with 5% nonfat milk and incubated with primary antibodies, horseradish peroxidase-conjugated IgG, and enhanced chemiluminescence Western blotting reagents. The visualized signals were quantitated by a densitor meter. Primary antibodies used were: Akt, phospho-Akt, signal transducers and activators of transcription 3 (STAT3), phospho-STAT3, STAT6, phospho-STAT6, PRDM16, PGC-1α, UCP-1, CD68, CD206, and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Santa Cruz Biotechnology, Santa Cruz, CA, USA).
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4

Protein Analysis of Xenograft Samples

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Xenografts at various time points were lysed and 75 μg of total protein was resolved on 4–15% SDS-PAGE gels and electro-transferred to polyvinylidene difluoride (PVDF) membranes as described previously (18 (link), 19 (link)). The membranes were incubated with the following primary antibodies at 1:1000 dilutions: UCP1 (ab10983, Abcam), UCP2 (AB3226, Millipore, Billerica, MA), UCP3 (ab3477, Abcam, Cambridge, MA), PRDM16 (sc130243, Santa Cruz Biotech, Dallas, TX), PGC-1α (sc-13067, Santa Cruz Biotech, CA), C/EBP-α (sc-16, Santa Cruz Biotech, Dallas, TX), PPARγ (sc-7273, Santa Cruz Biotech, Dallas, TX), COX IV (ab14744, Abcam, Cambridge, MA), COX-2 (160112, Cayman Chemicals, Ann Arbor, MI), ALDH1 (611195, BD Transduction, San Jose, CA), CD44 (3570S, Cell Signaling, Beverly, MA), Myf5 (sc-302, Santa Cruz Biotech, Dallas, TX); CD137 (ab3169, Abcam, Cambridge, MA), p38 MAPK (9212S, Cell Signaling, Beverly, MA), VEGF (ab46154, Abcam, Cambridge, MA), Cyclin D1 (sc 717, Santa Cruz Biotech, Dallas, TX), ColA1 (sc 25974, Santa Cruz Biotech, Dallas, TX), α-SMA (sc 53142, Santa Cruz Biotech, Dallas, TX), FN (HFN 7.1, Hybridoma Bank, Iowa City, IA), pp38 MAPK (9211S, Cell Signaling, Beverly, MA), and β-actin (sc-81178, Santa Cruz Biotech, Dallas, TX).
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5

Immunoblotting of cellular proteins

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Cellular proteins were isolated from cells at various time points for each group, and immunoblotting was performed as previously described [17 (link)]. The sources of primary antibodies used in this study are as follows: UCP1 (Abnova, USA), PGC-1α, AMPK, pAMPK, PPARγ (Cell Signalling Technology), AKT (Abcam, USA), phosphorylated AKT (pAKT, Thr308, Bioworld, USA), PRDM16, SIRT1 and C/EBPβ (Santa Cruz Biotechnology, USA). Protein levels were normalized to α-tubulin (GenScrept, USA).
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6

Western Blot Analysis of Metabolic Regulators

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Cells or tissue was lysed in lysis buffer (iNtRON Biotechnology, Seoul, Korea) supplemented with phosphatase and protease inhibitors. The total protein contents of the lysates were quantified using a protein assay kit (Bio-Rad, Hercules, CA, USA) and then equalized. Samples were separated by SDS-PAGE and transferred to nitrocellulose membranes. These membranes were blocked using 5% non-fat dried milk for 1 h and then incubated overnight at 4 °C with primary antibodies targeting AMPKα, phospho-AMPKα (Thr172), phosphor-hormone-sensitive lipase (p-HSL, Ser563), adipose triglyceride lipase (ATGL, Cell Signaling Technology), fatty acid-binding protein 4 (FABP4), CCAAT enhancer-binding protein α (C/EBPα), diacylglycerol acyltransferase 1 (DGAT1), glyceraldehyde 3-phosphate dehydrogenase (GAPDH), PGC1α, peroxisome proliferator-activated receptor alpha (PPARα), PRDM16 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), sterol regulatory element-binding transcription factor 1 (SREBP1), CPT1, or UCP1 (Abcam, Cambridge, UK). After washing, the membranes were incubated for 4 h with secondary antibodies conjugated with horseradish peroxidase (1:1000, Santa Cruz Biotechnology) in 5% non-fat dried milk. Reactive band was obtained by chemiluminescence and LAS image software (Fuji, Valhalla, NY, USA).
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7

Adipocyte Differentiation Protocol

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CA was purchased from Sigma-Aldrich (St. Louis, MO, USA). Pioglitazone hydrochloride was purchased from Jiangsu Hengrui Medicine (Jiangsu, China). Antibodies against GAPDH, peroxisome proliferatoractivated receptor γ (PPARγ), PPARγ coactivator 1α (PGC-1α), and uncoupling protein 1 (UCP1) were purchased from Abcam (Cat #: ab 8245, ab 209350, ab 54481, ab 10983, Cambridge, MA, USA). Antibodies against PR domain-containing 16 (PRDM16) were purchased from Santa Cruz Biotechnology (Cat #: sc-55697). All other reagents, except where specifically identified, were obtained from Beijing Sinopharm Chemical group (Beijing, China).
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