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8 protocols using facs ariaiii

1

Isolation of CD117+ and CD133+ Cells

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To isolate the cell population with an ALDH activity, an ALDEFLUOR assay kit (STEMCELL Technologies) was used according to the manufacturer. Allophycocyanin (APC) mouse anti-human CD117 and CD133 (BD Biosciences, San Diego, CA, USA) were used to isolate CD117+ and CD133+ cells. After trypsinization, cells were washed with 1 mL cold PBS by centrifuging at 500× g for 5 min. Cells were suspended in PBS and incubated with anti-CD117 and anti-CD133 antibodies. After incubation for 30 min on ice in the dark, cells were washed twice with PBS, and resuspend in PBS. The CD117+ and CD133+ cells were isolated by using a Flow cytometry sorter (BD FACS Aria Ⅲ, San Diego, CA, USA).
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2

Intracellular ROS Measurement in H1975 Cells

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To measure intracellular ROS production, H1975 cells (1×106 cells/well) were seeded into 6-well plates and incubated at 37 °C for 12 h. FePt/GO NSs at different concentrations were added into medium and incubated at 37 °C for 24 h. The cells were collected in 1 mL 1640 medium without FBS, and incubated with DCFH-DA probe (10 µM) in the dark at 37 °C for 30 min. The cells were then washed with serum-free RPMI-1640 3 times and the fluorescence signals were recorded by flow cytometry (BD FACS AriaⅢ, USA).
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3

Sorting Transitional and Naïve B Cell Subsets

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Blood samples from healthy donors were obtained from the Australian Red Cross Blood Service. Peripheral blood mononuclear cells were prepared by Ficoll Histopaque (GE Healthcare, Chicago, IL, USA) and cells were cryopreserved in 50% fetal bovine serum, 40% RPMI (Thermo Fisher Scientific, Boston, MA, USA) and 10% dimethyl sulfoxide for 10–100 million/tube. Nearly 50–100 million peripheral blood mononuclear cells were thawed and washed in RPMI medium. Cells were then incubated with Fc block (BioLegend, San Diego, CA, USA) for 30 min at 4°C. After washing, cells were stained with antibodies against CD19 (BV421, HIB19; BioLegend), IgD (PerCP‐CY5.5, IA6‐2; BD, San Diego, CA, USA), CD27 (PE‐CY7, M‐T271; BD), CD10 (PE, HI10a; BD), IgM (BV421, MHM‐88; BioLegend), CD3 (APC‐CY7, SK7; BD), CD14 (APC‐CY7, MOP9; BD) and viability dye (eFluor780; eBioscience). Transitional B cells (CD19+CD27IgD+CD10+) with IgMhi (top 25%) and IgMlo (bottom 25%), and mature naïve B cells (CD19+CD27IgD+CD10+) with IgMhi (top 25%) and IgMlo (bottom 25%) were sorted on BD FACS Aria Ⅲ into 350 µL RLT lysis buffer (Qiagen, Venlo, Netherlands) and frozen at –80°C. For each donor, 10 000 cells were sorted for each population.
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4

Mitochondrial Isolation and FACS

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MEFs or C2C12 cells were harvested by brief trypsinization, followed by neutralization of trypsin, washing, and fixation within 4% paraformaldehyde in PBS. For mitochondrial FACS, the isolated mitochondria were fixed within 4% paraformaldehyde in PBS and washed with MIM buffer. The BD FACS AriaⅢ was used for analysis by 488-nm and 561-nm laser for excitation, FITC (green) and PE (red) channels for detection. Data were analyzed using FlowJo_V10 software.
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5

Purification and Characterization of T Cell Subsets

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For cell sorting, splenocytes from 7- to 8-week-old BALB/C mice were used to purify CD4+, CD8+ or CD25+ T cells according to the manufacturer’s instructions (BD FACSAria Ⅲ, BD Biosciences, Germany). The purity of T cells was confirmed by flow cytometry. For cell surface staining, the cells were resuspended in PBS (1 × 105 cells/mL). Fluorescence-labeled monoclonal antibodies anti-CD4, anti-CD25, anti-CD34, anti-CD105, anti-CD44, anti-CD29, and anti-CD90 were, respectively, added and incubated in the refrigerator at 4°C for 30 min. All antibodies for flow cytometry were purchased from BD Biosciences. Flow cytometry analysis was performed with a FACS Aria II Cell Sorter (BD Biosciences) and data analysis was carried out using FlowJo software (TreeStar, Ashland, USA).
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6

Evaluating Fungal Cell Viability with FUN1

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FUN1 Cell Stain (Cat: F7030, Invitrogen), a unique two-color fluorescent viability probe for yeast and fungi, was introduced to test the viability of F. pedrosoi-spores, -hyphae and in vitro-induced sclerotic cells. Briefly, the three types of fungal cells were pre-stained with FUN1 dye, and their viability was measured using flow cytometer (BD FACS Aria Ⅲ) according to the protocol by setting the 488 nm laser line as the excitation source, standard FITC channel for detection of green emission (dead/metabolically inactive cells) and PE channel for red emission (live/metabolically active cells). The fungal cells with red emission or two-color emissions were considered viable. In addition, the fungal cells without FUN1 treatment were set as self-fluorescence control. The fungal cells which were heat-killed by incubation in a water-bath at 70°C for 90 min and stained with FUN1 were set as the dead cell control.
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7

Isolation and Characterization of Rat Mesenchymal Stem Cells

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Healthy SD rats weighted 80-100g were killed by cervical dislocation. The fur was disinfected with 75% alcohol and then the femurs and tibias were removed aseptically. Bone marrow cell suspension was obtained by flushing marrow cavity using dispensable 1-ml syringe with low-glucose dulbecco’s modified eagle medium (DMEM). Then bone marrow cell suspension was filtrated through 200-mesh sieve in order to remove bone debris. The obtained bone marrow cells were shifted into culture dishes and incubated at 37°C in a humidified atmosphere containing 5% CO2, with low-glucose DMEM plus 10% heat-inactivated fetal bovine serum (FBS, Gibco, Grand Island, NY, USA) and 100 000 U/L penicillin–streptomycin (Beyotime Biotechnology, Shanghai, China). The medium was changed every 3 days. Cells at 4th to 6th passage were utilized for subsequent experiments. Samples of cultured cells were authenticated on fluorescence-activated cell sorter (FACSAriaⅢ, Becton–Dickinson Biosciences, San Jose, CA, USA) to determine the expression antigen of mesenchymal stem cells with the use of anti-rat CD29, CD90, CD45 and CD11b (BioLegend, San Diego, CA, USA).
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8

Isolation of Thymic Epithelial Cells

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Preparation of thymic epithelial cells was performed as previously described [76 (link)]. Thymic tissue were cut into small pieces by forceps and placed into 15 mL tube containing 2mL of RPMI-1640 (Sigma) + 1% FCS. After pipetting and settling for 2 min, the supernatant were discarded. This was repeated several times. RPMI-1640 + 1% FCS containing 0.5 U/mL Liberase TM (Sigma-Aldrich) and 0.02% (w/v) DNaseⅠ (Roche) were added to remaining thymic fragments and incubated at 37°C for 12 min. After settling for 2 min, the supernatant were collected into 15 mL tube and suspended with PBS (-) + 1% FCS + 5 mM EDTA. This step was repeated twice. After washing cells, they were passed through mesh. Single cell suspension was stained with CD45 (clone 30-F11, eBioscience), EpCAM (clone G8.8, eBioscience), Ly51 (clone 6C3, BD Pharmingen) and UEA-1 (Vector Laboratories) and sorted by using FACSAriaⅢ (Becton Dickinson).
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