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3 protocols using anti tiar antibodies

1

Antibody Reagents for Protein Analysis

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Anti-α-tubulin monoclonal antibody was purchased from Sigma-Aldrich. Anti-eIF4γ, anti-BiP/Grp78, anti-PKCδ and anti-G3BP1 monoclonal antibodies were from BD Bioscience; anti-Atg5, anti-Atg16L1, anti-eIF2α, anti-phospho-eIF2α, anti-cleaved caspase7 (cCas7), anti-PERK, anti-cleaved poly(ADP-ribose) polymerase (cPARP), anti-PKD1, anti-phospho-(Ser/Thr) PKD substrates and anti-TIAR antibodies were from Cell Signaling Technology; anti-DAP1, phospho-PKD1 (S738/742) and phospho-PKD1 (S916) antibodies were from Abcam; anti-ATF4 antibody was from Santa Cruz Biotechnology; and anti-GAPDH, anti-PKD2 and anti-PKD3 antibodies were from GeneTex. Anti-DnaK antibody was obtained from ENZO. Anti-SubAB antibody was prepared as previously described (Yahiro et al., 2006 (link)). PKC inhibitor Gö6976 was obtained from LC Laboratories; PKC activator PMA, PKC inhibitor Gö6983, PKD/PKCμ inhibitor CID755673, PKA activator 8Br-cAMP, Thapsigargin (TG), CaM kinase II inhibitor KN-93 were from Sigma Aldrich; and PKA inhibitor 14–22 Amide was from Calbiochem; PKC inhibitor Bisindolylmaleimide II was from ALEXIS Biochemicals; and ROCK II inhibitor Y-27632 was from Cayman Chemical.
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2

RIP Assay for Detecting RNA-Protein Interactions

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The RNA immunoprecipitation (RIP) assay was performed using the RiboCluster Profiler RIP assay kit (MBL), anti-TIA-1, anti-TIAR antibodies, and protein G sepharose beads (Cell Signaling) according to the manufacturers’ protocols and our previous study [22 (link)]. Cellular RNA was pulled down with the antibodies and pre-immune rabbit IgG (supplied with the kit). The co-precipitated RNA was purified and sequentially subjected to RT-qPCR to detect TPD52 and β-actin.
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3

RNA Immunoprecipitation Assay for TPD52

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The RNA immunoprecipitation (RIP) assay was performed using the RiboCluster Profiler RIP assay kit (MBL), anti-TIA-1, anti-TIAR antibodies, and protein G sepharose beads (Cell Signaling) according to the manufacturers' protocols and our previous study [22] . Cellular RNA was pulled down with the antibodies and pre-immune rabbit IgG (supplied with the kit). The co-precipitated RNA was purified and sequentially subjected to RT-qPCR to detect TPD52 and β-actin.
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