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2 protocols using rapamycin

1

Betulinic Acid and Cell Death Mechanisms

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Betulinic acid (BioSolution Halle, Halle, Germany, >99% purity) was dissolved in DMSO at 4 mg/ml and stored at −80 °C. PI and CsA were purchased from Sigma-Aldrich (St. Louis, MO, USA). Rapamycin was purchased from VWR (Amsterdam, The Netherlands) and C-14 valine (CFB75-50 μCi) from Amersham Biosciences (Amersham, UK). Q-VD-OPh was purchased from R&D Systems (Minneapolis, MN, USA). Necrostatin-1 and TNF-α were obtained from Enzo Life Sciences (Farmingdale, NY, USA). Anti-LC3 antibody (51520) was obtained from Abcam (Cambridge, UK). Anti-ATG5 antibody and anti-SQSTM1/p62 were from Cell Signaling Technology (Danvers, MA, USA). Anti-αTubulin antibody was from Santa Cruz Biotechnology (Dallas, TX, USA). Annexin V-APC and 7-AAD were from BD Biosciences (Franklin Lakes, NJ, USA). Mitotracker Orange CMTMRos and JC-1 were obtained from Life Technologies (Carlsbad, CA, USA).
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2

Hep3B Cell Cytotoxicity Assay

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Hep3B cells from the American Type Culture Collection (Manassas, VA, USA) were grown in Dulbecco’s Modified Eagle’s medium-high glucose, supplemented with 10% fetal bovine serum, penicillin/streptomycin (100 U/ml) in a humidified 5% CO2 atmosphere at 37 °C. Cell culture reagents were purchased from Sigma (St Louis, MO, USA). For treatments, regular medium was replaced with fresh medium containing 1 or 2 mM melatonin (Sigma) with or without sorafenib (Santa Cruz Biotechnology, Dallas, TX, USA) at 2.5, 5 and 10 μM. Both reagents were dissolved in DMSO (Sigma) (0.2% at final concentration). CoCl2 (Panreac AppliChem, Barcelona, Spain) was added at 100 μM to mimic hypoxia [14 (link)]. We used 5 μM Baf-A1, 100 μM CHX, 1 mM DMOG, 50 μM LY294002, 10 μM MG132 (Tocris Bioscience, Bristol, UK) and 20 nM rapamycin (VWR, Radnor, PA, USA).
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