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4 protocols using secondary antibodies conjugated to hrp

1

Western Blot Analysis of PICK1 and GFP

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Cell lysates or protein samples were resolved on 7% SDS-PAGE gels and transferred to PVDF using a wet transfer apparatus and blocked in 5% milk solution in PBS-Tween20. The membranes were probed with appropriate primary and secondary antibodies (see below) and the bands were visualized using ECL Western blotting substrates (Thermo Fisher Scientific or GE Healthcare). Where appropriate, the membrane was stripped with Restore Western Blot Stripping Buffer (ThermoFisher) and re-probed. Membranes were incubated with the following primary antibodies: anti-PICK1 (Neuromab) and anti-GFP (Neuromab).
Secondary antibodies conjugated to HRP were obtained from GE Healthcare and used at 1:10,000 dilutions. For densitometry, Western blot films were scanned and analyzed using ImageJ followed by the appropriate statistical analysis carried out using GraphPad Prism. All error bars on graphs represent the standard error of the mean.
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2

Western Blot Analysis of U2OS Cells

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U2OS cells were lysed in lysis buffer (125 mM K-acetate, 25 mM Hepes, 5 mM EGTA, and 2.5 mM Mg-acetate, pH 7.2) complemented with 0.5% NP-40, protease inhibitor cocktail, and DTT. Cell lysates were subjected to SDS-PAGE and blotted onto polyvinylidene fluoride membranes (Millipore). The membranes were incubated overnight at 4°C with primary antibodies diluted in 2% blotting grade nonfat dry milk (Bio-Rad), followed by 1-h incubation with secondary antibodies conjugated to HRP (GE Healthcare). Either the ECL Prime Western Blotting Detection (GE Healthcare) or the SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific) followed by imaging using a Kodak Image Station 4000R equipped with a charge-coupled device camera were used for chemiluminescence detection. Quantification of chemiluminescence intensity was performed by densitometric analysis with ImageQuant TL software (GE Healthcare).
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3

Antibody Characterization Protocol

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The antibodies used for our studies were the following: anti-β-actin (catalog no.: A5441) and anti-FLAG M2 (catalog no.: F3165) from Sigma–Aldrich; anti-β2AR H-20 (catalog no.: sc-569), anti-HA (catalog no.: sc-805), anti-c-RAF (catalog no.: sc-133), and anti-TRAF6 (catalog no.: sc-7221) from Santa Cruz Biotechnology; anti-HA 12CA5 (catalog no.: 11666606001) from Roche diagnostics; anti-Ub FK2-horseradish peroxidase (HRP) (catalog no.: BML-PW0150) from Enzo Life Sciences; anti-K63-linked polyubiquitin (clone APU3; catalog no.: 05-1308), from Millipore; anti-K48-linked polyubiquitin (catalog no.: 12805) and anti-GAPDH-HRP (catalog no.: 3683) from Cell Signaling Technology; anti-USP20 (catalog no.: A301-189A) from Bethyl Laboratories, Inc; anti-MDM2 (catalog no.: ab87134) from Abcam, Inc; and anti-GFP/GFP variants (catalog no.: MBL-598) from MBL International Corporation. Secondary antibodies conjugated to HRP were obtained from GE Healthcare or Rockland Immunochemicals, whereas secondary antibodies conjugated to Alexa fluorophores were purchased from Invitrogen. Anti-β-arr antibodies A1CT and A2CT were kindly provided by Dr Robert J. Lefkowitz (Duke University, Durham, NC).
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4

Synaptic Vesicle Protein Localization

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Bafilomycin 1A was obtained from Calbiochem (San Diego, CA, United States). CPP [3-(2-carboxypiperazin-4-yl) propyl-1-phosphonic acid] and CNQX (6-cyano-7-nitroquinoxaline-2,3-dione) were purchased from Tocris Bioscience (Ellisville, MO, United States). FM4-64 was obtained from Biotium (Hayward, CA, United States). Brefeldin A (BFA) was purchased from LC Laboratories. Antibody against synaptophysin was obtained from Invitrogen/Life Technologies (Grand Island, NY, United States). Mouse anti-SV2 antibody was a gift of R. Kelly (UCSF) and rabbit anti-VGLUT1 antibody was a gift of R. Edwards (UCSF). Antibodies against AP-1γ, AP-2α, and β-NAP were purchased from BD Bioscience. Secondary antibodies conjugated to FITC, Cy3, or Cy5 were from Jackson ImmunoResearch (West Grove, PA, United States). Secondary antibodies conjugated to HRP were from GE Healthcare Life Sciences. All other chemicals were from Sigma–Aldrich (St. Louis, MO, United States). Cell culture reagents were from Life Technologies, unless otherwise noted.
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