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10 protocols using e coli o127 b8 lps

1

Lipopolysaccharide-Induced Acute Lung Injury

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The randomization of C57BL/6J mice was performed by body weight and motor activity in an open field test. Dexamethasone (5 mg/kg) and 6e (30 mg/kg) were administered intraperitoneally in 10 mL/kg sterile saline. The control animals received an equal volume of the vehicle. After 1 h, the mice were anesthetized with isoflurane inhalation until their breathing rate was decreased. The mice were suspended by the front incisors on an inclined surgical table, the tongue was pulled out with narrow curved tweezers, and 1 mg/mL of E. coli O127:B8 LPS (Sigma-Aldrich, St. Louis, MO, USA) in 1 mL/kg sterile saline was instilled into the back of the oropharynx [35 (link)]. Intact control animals received an equal volume of sterile saline similarly.
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2

Structural Analysis of Antimicrobial Peptides

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The secondary structures of peptides in different environments were measured using CD spectroscopy. The CD spectra were collected at 25 °C on a CD Spectrometer Model 410 (AVIV, Biomedical, USA) equipped with a 0.1-mm path-length quartz cell. The final concentration of SRP-2 was 15 μM. Peptide samples in PBS (pH 7.4) were under the conditions of 30–240 mM sodium dodecyl sulfate (SDS) micelles, 50% trifluoroethanol (TFE), or 6–48 μM E. coli O127:B8 LPS (Sigma-Aldrich, USA). The spectra were recorded at 200–250 nm using a scan speed of 10 nm/min. At least eight scans were collected and averaged for each sample. CD measurements on the interactions of SRP-2 with actual bacterial cells were also carried out, using the method described by Avitabile et al.36 (link) with modifications. In this experiment, SRP-2 at a final concentration of 15 μM was interacted with MDRAB at different cell concentrations (2.5, 5, 10 × 105 CFU/mL) in PBS (pH 7.4). The CD spectra of the peptide-bacteria mixtures at different interaction time (0, 1, 2, and 3 h) were recorded with a 1-mm path-length quartz cell at 25 °C. The CD spectra–based secondary structure analysis of the peptides was performed using the web server DichroWeb37 (link). The K2D algorithm, an unsupervised learning neural network, was used to estimate the related secondary structures of the peptides38 (link).
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3

LPS-Induced Lung Injury Model in Mice

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The randomization of C57BL/6J mice was performed by body weight and motor activity in an open field test. Dexamethasone (5 mg/kg) and 9g (30 mg/kg) were administered intraperitoneally in 10 mL/kg sterile saline. The control animals received an equal volume of the vehicle. After 1 h, the mice were anesthetized with isoflurane inhalation until their breathing rate was decreased. The mice were suspended by the front incisors on an inclined surgical table, the tongue was pulled out with narrow curved tweezers, and 1 mg/mL of E. coli O127:B8 LPS (Sigma-Aldrich, St. Louis, MO, USA) in 1 mL/kg sterile saline was injected into the back of the oropharynx [49 (link)]. Intact control animals received an equal volume of sterile saline similarly.
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4

LPS-Induced Lung Injury in Mice

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Prior to the experiment, C57BL/6J mice were randomized according to body weight and motor activity in an open field test. Reference drug dexamethasone (5 mg/kg) or tested compound 4a (30 mg/kg) was administered to the respective experimental groups with intraperitoneal injection in 10 mL/kg of sterile saline. Animals of the control group were injected with an equal volume of the vehicle. Animals were anesthetized with isoflurane inhalation until the breathing rate decreased 1 h later. Mice were suspended by the front incisors on an inclined surgical table; the tongue was pulled out with narrow curved tweezers, and 1 mg/mL of E. coli O127:B8 LPS (Sigma-Aldrich, Israel) in 1 mL/kg sterile saline was injected into the back of the oropharynx to allow aspiration [13 (link)]. Intact animals received an equal volume of sterile saline in a similar way.
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5

Cytokine and Endotoxin Reagents for Dendritic Cell Culture

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Recombinant mouse granulocyte–macrophage colony stimulating factor (GM-CSF) was purchased from BioLegend (San Diego, CA, USA). To maintain DCs, RPMI 1640 medium, fetal bovine serum (FBS), and penicillin–streptomycin solution were used, purchased from Biowest (Nouaille, France). E. coli O111:B4 LPS used in the in vitro experiments was purchased from Invivogen (San Diego, CA, USA) and E. coli O127:B8 LPS used for the in vivo experiments was purchased from Sigma-Aldrich (St. Louis, MO, USA). Quinolone antibiotics ciprofloxacin was purchased from Sigma-Aldrich (St. Louis, MO, USA). IOX1 and JIB-04 were purchased from Selleckchem (Houston, TX, USA). An MTT Cell viability kit was purchased from Promega (Madison, WI, USA). For western blotting, Kdm4A, H3K9me3, H3K36me3 and H3 were purchased from Abcam (Cambridge, MA, USA). Protease inhibitor cocktail Luria–Bertani (LB) broth powder and LB agar powder were both purchased from Biobasic (Amherst, NY, USA) and a LAL Endotoxin Detection Kit was purchased from Lonza (Basel, Switzerland)30 (link),31 (link).
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6

Sciatic Nerve Injury Model

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Sciatic-nerve transection and ligation was performed as previously described9 (link). LPS (E. coli O127:B8, Sigma) was administered as a single 2.5 mg/kg intraperitoneal dose. Tamoxifen (Sigma) was injected as 100 mg/kg per animal for five consecutive days for recombination. All the experiments were performed 7 days after the first dose of Tamoxifen injection.
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7

Magnetic Cell Separation and Myeloid Cell Activation

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Cell separation out of cell suspensions was performed with magnetic beads following the instructions of the manufacturer (Miltenyi Biotec GmbH, Bergisch Gladbach). Bone marrow-derived myeloid cells were generated from bone marrow as described (29 (link)). For evaluation of NO production capacity, these cells were stimulated with LPS (E. coli O127:B8, 0.1 µg/ml, Sigma) and IFNγ (120–240 IU/ml, PeproTech GmbH, Hamburg) for 48 h.
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8

Survival and Cytokine Analysis in BALB/c Mice with LPS-Induced Inflammation

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The 6-week-old female BALB/c mice were intraperitoneally injected 20 mg/kg of IOX1 (Sellectchem). For survival rate analysis, after the 30 min, IOX1-injected mice were i.p. injected 20 mg/kg of LPS (E. coli O127:B8, Sigma-Aldrich, St. Louis, MO) (5 mice/group). The survival rate was observed for 48 h. For other analysis, After the 2 h, IOX1-injected mice were i.p. injected 10 mg/kg of LPS (5 mice/group). After the 2 h, the serum was harvested for pro-inflammatory cytokine ELISA. Next day, these mice were sacrificed depending on animal ethics. The half of the lung was fixed by paraformaldehyde. And then, these lungs were sliced for making tissue slide and that slides were stained by hematoxylin and eosin. The other side of lung was homogenized using a Bullet Blender homogenizer (Next Advance, NY, USA). The pro-inflammatory cytokines in lung were measured by ELISA. The AST, ALT, BUN and creatinine levels in the serum were measured using total laboratory automation (Hitachi, Japan) and TBA-200FR NEO (Toshiba, Japan) systems. The study was carried out in compliance with the ARRIVE guidelines.
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9

C2C12 Myoblast Differentiation with LPS

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Proliferative myoblasts C2C12 (CRL-1772™—ATCC—Manassas, VI, USA; donated by Anita Boelen) in passage number 7 to 10 were expanded in growth medium (Dulbecco’s Modified Eagle Medium, DMEM (Gibco, #12800-017, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% fetal bovine serum (FBS, #12306C, Sigma Aldrich, Saint Luis, MO, USA), 1% penicillin, and 1% streptomycin (PS—#15140, Gibco, Thermo Fisher Scientific, Waltham, MA, USA) at incubator atmosphere 5% CO2 and 37 °C. The cells were seeded in 0.1% gelatin 6 well plates (Costar, Corning Glandale, AZ, USA) at 5.23 × 103 cells/cm2 and cultured in growth medium for 48 h until reaching 80–100% confluence. On day 0, the differentiation was induced by medium change (DMEM supplemented with 2% horse serum (HS—Sigma Aldrich, Saint Luis, MO, USA), 1% penicillin, 1% streptomycin). The control group only received the medium, while the experimental group was cultured in medium with 10 ng/mL of lipopolysaccharide (LPS—E. coli O127:B8, Sigma Aldrich, Saint Luis, MO, USA). The medium of both groups was refreshed every 48 h. The conditioned medium was collected at 24 h. Cell samples were collected in cold PBS on days 1 (24 h) and 4 (96 h) after differentiation induction by cell scrap.
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10

LPS-Induced Acute Toxemia in Rats

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After one week of acclimation, LPS endotoxin of E. coli was used to induce acute toxemic reactions. The LPS-induced toxemia in rats was made by injecting 5 mg/kg BW of LPS (E. coli O127: B8; Sigma, St. Louis, MO, USA) in 1 mL normal saline intravenously.
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