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6 protocols using sodium arsenite solution

1

Arsenic Speciation in Plant Extracts

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The separation and identification of the As species present in fresh plant extracts was performed using HPLC-ICP-MS. An IonPac®AS7 anion exchange column (Dionex, Sunnyvale, USA) was used for the separation of As species on a 1100 Series HPLC system (Agilent Technologies) coupled to VG PQ EXCELL ICP/MS (Thermo Elemental). A gradient of 0.04 mM HNO3 and 50 mM HNO3, (0–5 min, 0%; 5–5.2 min, 0–10%; 5.2–11 min, 10%; 11–11.2 min, 10–100%; 11.2–13 min, 100%; 13–13.2, 100–0.0%; 13.2–18 min, 0.0% of 50 mM HNO3) was used to elute various inorganic and methylated As species. NIST 1568a rice flour was analyzed for analytical quality Control (total sum of species 279 ± 3 μg kg−1 with 32% iAs and 64% methylated As). Standards of arsenite (sodium arsenite solution, 0.05 M, Merck, Darmstadt, Germany), arsenate (Arsenic standard 1000 mg As L−1 [As2O5 in water] Titrisol, Merck), dimethylarsinic acid (cacodylic acid, Alfa Aesar, Karlsruhe, Germany) and methylarsonic acid (Luxembourg Industries (PAMOL) Ltd. Tel-Aviv (Israel)) were used for the identification of As species in plant extracts. For identification of MAIII, it was synthesized by the method of Cullen et al.53 and identified through HPLC-(ICP-MS)/(ESI-Q-TOF-MS) as described in the supplementary information (Supplementary method & Supplementary Fig. S2).
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2

Tea Extracts and Protein Aggregation

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PTE, green tea extract (GTE), and black tea extract (BTE) were kindly supplied by the China Academy of Pu-Erh Tea Research [21 (link), 22 (link)]. These extracts were dissolved in distilled water and adjusted to pH 7.4 with 1 M NaOH. Ammonium chloride (NH4Cl), a lysosomal inhibitor, was purchased from Wako Pure Chemical Industries (Osaka, Japan). Lactacystin (Calbiochem, Bad Soden, Germany) was dissolved in dimethyl sulfoxide (DMSO). Sodium arsenite solution was purchased from EMD Millipore (Darmstadt, Germany). Anti-FUS/TLS, anti-LDLR (low density lipoprotein receptor), anti-TDP-43, anti-V5, anti-β-actin, and horseradish peroxidase-conjugated secondary antibody were purchased from Santa Cruz Biotechnology (Santa Cruz, CA), Abnova (Taipei City, Taiwan), Cell Signaling Technology (Beverley, MA), Invitrogen (Carlsbad, CA), Sigma (St. Louis, MO), and Thermo Scientific (Waltham, MA), respectively. Anti-EWS and anti-TAF15 were purchased from Cell Signaling Technology (Beverley, MA). The SOD1 antibody was a kind gift from Dr. Noriko Fujiwara.
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3

Macrophage Polarization Signaling Assay

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Sodium arsenite solution was purchased from Merck. Phorbol 12-myristate 13-acetate (PMA) and butylated hydroxyanisole (BHA) were purchased from Sigma Aldrich. Anti-human CD68 antibody conjugated with phycoerythrin (PE), CD163 antibody conjugated with FITC and anti-mouse CD206 antibody conjugated with PE were from Biolegend. Anti-human CD206 antibody conjugated with FITC was from BD Biosciences. SOD1 DNA plasmids (NM_001752 and NM_000454) were purchased from Origene. Antibodies against LC-3II (Medical and Biological Laboratories), p62 (Sigma Aldrich), Arg-1 (Santa Cruz) and iNOS (Millipore) were used.
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4

Antibodies and Inhibitors for Cancer Research

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Antibodies used in this study are as follows: tubulin (#T5168) and Flag (#F3165) were purchased from Sigma-Aldrich (St. Louis, MO); PARP1 (#sc-7150) for Western blotting from Santa Cruz Biotechnology (Santa Cruz, CA); PARP1 (#9532) for immunoprecipitation (IP), MET (#8198), phosphorylated MET (#3077), phosphorylated EGFR for IHC (#3777) and EGFR (#4267) from Cell Signaling Technology (Danvers, MA); and phosphorylated EGFR for Western blotting (#5650), Ki67 (#21700), cleaved caspase 3 (#2302), γ-H2AX (#140498), and PAR (#14460) from Abcam (Cambridge, MA); 8-hydroxy-2′-deoxy guanosine (8-OHdG) from Genox Corporation (Baltimore, MD). The mouse phospho-Y907-PARP1 antibody was generated against a phosphorylated synthetic peptide (ADMVSKSAN-Yp-CHTSQGD) at China Medical University as described previously (13 (link)). The following inhibitors were used in this study: MET kinase inhibitor crizotinib (#C-7900) was purchased from LC Laboratories (Woburn, MA); EGFR inhibitor gefitinib (#S1025) and erlotinib (#S1023) from Selleck Chemicals (Houston, TX); PARP inhibitors ABT-888 (veliparib, #CT-A888) and AG014699 (rucaparib, #CT-AG01) from ChemieTek (Indianapolis, IN). Hydrogen peroxide (#216763) and sodium arsenite solution (#35000) were obtained from Sigma-Aldrich.
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5

siRNA Knockdown of STAU1 and mTOR

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The small interfering RNAs (siRNAs) used in this study were: All Star Negative Control siRNA (QIAGEN, Hilden, Germany; Cat# 1027280), human siSTAU1: 5′-CCUAUAACUACAACAUGAGdTdT-3′,11 (link),15 (link)–17 (link) and siMTOR: 5′-GAG CCUUGUUGAUCCUUAA-3′.19 (link) All siRNA oligonucleotides were synthesized by Invitrogen (Carlsbad, CA). The oligonucleotides were deprotected, and the complementary strands were annealed. Bafilomycin A1 (Baf; InvivoGen, San Diego, CA; Cat# tlrl-baf1), rapamycin (InvivoGen, Cat# tlrl-rap), thapsigargin (Tocris, Ellisville, MO; Cat# 1138), tunicamycin (Tocris, Cat# 3516), Ionomycin (Tocris, Cat# 1704), and sodium arsenite solution (Sigma-Aldrich, St Louis, MO; Cat# 1062771000) were used in this study.
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6

Diverse Reagents for Cell Signaling

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Sodium arsenite solution, catalase from bovine liver, and superoxide dismutase (SOD) from bovine liver were from Sigma-Aldrich (St. Louis, MO). GAPDH, p65, NFAT4, and lamin A/C antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA) with all other antibodies purchased from Cell Signaling Technology Inc. (Beverly, MA). Prostaglandin E2 EIA Kit was from Cayman Chemical Company (Ann Arbor, MI). The human TNF-alpha ELISA Kit was from RayBiotech, Inc. (Norcross, GA).
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