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Radiolabeled compounds

Manufactured by PerkinElmer
Sourced in United States

Radiolabeled compounds are chemical substances that have been tagged with radioactive isotopes. These compounds are used in various scientific and medical applications, including research, diagnostic imaging, and therapeutic procedures. The core function of radiolabeled compounds is to serve as tracers, allowing researchers and clinicians to monitor and study biochemical processes or to target specific cells or tissues within the body.

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5 protocols using radiolabeled compounds

1

Opioid Ligand Binding Assay Protocol

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Radiolabeled
compounds were purchased from PerkinElmer (Waltham, MA, U.S.). Opioid
ligand binding assays were performed by competitive displacement of
0.2 nM [3H]diprenorphine (250 μCi, 1.85 TBq/mmol)
by the peptidomimetic from membrane preparations containing opioid
receptors as described above. The assay mixture, containing membranes
(20 μg protein/tube) in 50 mM Tris-HCl buffer (pH 7.4), [3H]diprenorphine, and various concentrations of test peptidomimetic,
was incubated at room temperature for 1 h to allow binding to reach
equilibrium. The samples were rapidly filtered through Whatman GF/C
filters using a Brandel harvester (Brandel, Gaithersburg, MD, U.S.)
and washed five times with 50 mM Tris-HCl buffer. Bound radioactivity
on dried filters was determined by liquid scintillation counting,
after saturation with EcoLume liquid scintillation cocktail, in a
Wallac 1450 MicroBeta (PerkinElmer, Waltham, MA, U.S.). Nonspecific
binding was determined using 10 μM naloxone. The results presented
are the mean ± standard error (SE\M) from at least three separate
assays performed in duplicate. Ki (nM)
values were calculated using nonlinear regression analysis to fit
a logistic equation to the competition data using GraphPad Prism,
version 6.0c, for Mac OS X (GraphPad Software Inc., La Jolla, CA).
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2

Opioid Receptor Binding Assay Using Radiolabeled Ligand

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Radiolabeled compounds were purchased from Perkin-Elmer (Waltham, MA, U.S.). Opioid ligand binding assays were performed by competitive displacement of 0.2 nM [3H]-diprenorphine (250 μCi, 1.85 TBq/mmol) by the peptidomimetic from membrane preparations containing opioid receptors as described above. The assay mixture, containing membranes (20 μg protein/tube) in 50 mM Tris-HCl buffer (pH 7.4), [3H]-diprenorphine, and various concentrations of test peptidomimetic, was incubated at room temperature on a shaker for 1 h to allow binding to reach equilibrium. Samples were rapidly filtered through Whatman GF/C filters using a Brandel harvester (Brandel, Gaithersburg, MD, U.S.) and washed three times with 50 mM Tris-HCl buffer. Bound radioactivity on dried filters was determined by liquid scintillation counting, after saturation with EcoLume liquid scintillation cocktail, in a Wallac 1450 MicroBeta (Perkin-Elmer, Waltham, MA, U.S.). Nonspecific binding was determined using 10 μM naloxone. The results presented are the mean ± standard error (S.E.M.) from at least three separate assays performed in duplicate. Ki (nM) values were calculated using nonlinear regression analysis to fit a logistic equation to the competition data using GraphPad Prism, version 6.0c (GraphPad Software Inc., La Jolla, CA).
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3

Enzymatic Manipulation of Nucleic Acids

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Exonuclease-free Klenow fragment of Escherichia coli DNA polymerase I, terminal transferase (TdT), and T4 polynucleotide kinase (PNK) were from New England Biolabs. DNase (deoxyribonuclease)-free RNase (ribonuclease), ribonucleotides, and deoxyribonucleotides were obtained from Roche. RNase-free DNase I was from United States Biochemical. The phiX174 Hinf I digest DNA ladder was from Promega. Radiolabeled compounds were from PerkinElmer. DNA oligonucleotides were from Integrated DNA Technologies. G-25 spin columns were from Harvard Apparatus. AZTTP was obtained from PerkinElmer, and ddCTP and ddGTP were from United States Biologicals. Nevirapine (NVP), rilpivirine (RPV), and efavirenz (EFV) were obtained from the National Institutes of Health AIDS Research and Reference Reagent Program. All other chemicals were obtained from Fisher Scientific, VWR, or Sigma.
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4

Synthesis of Modified Nucleotides

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3′-Fluor (F) and 3′-O-methyl (O–CH3) dTTP were synthesized
by AX Molecules Inc. (San Marcos, CA). 3′-Amino (NH2) dTTP and dideoxy TTP (ddTTP) were from TriLink Bio Technologies
(San Diego, CA). AZTTP and d4TTP were from Sierra Bioresearch (Tucson,
AZ). 4′-C-Methyl, 4′-C-ethyl, and d-carba dTTP23 (link),31 (link) were a generous
gift from Dr. Stephen Hughes (National Institutes of Health). All
other nucleotides were from Roche Diagnostics Corporation (Indianapolis,
IN). All nucleotides had purity levels >95% (as determined by mass
spectroscopy and TLC analysis). T4 polynucleotide kinase (PNK) was
from New England Biolabs (Ipswich, MA). Radiolabeled compounds were
from PerkinElmer (Waltham, MA). DNA oligonucleotides were from Integrated
DNA Technologies (IDT) (Coralville, IA). G-25 spin columns were from
Harvard Apparatus (Holliston, MA). All other chemicals were obtained
from Thermo Fisher Scientific (Waltham, MA), VWR International (Radnor,
PA), or Sigma-Aldrich (St. Louis, MO).
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5

Biochemical Reagents for Molecular Biology Experiments

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Calf intestinal alkaline phosphatase (CIP), T3 RNA polymerase, “High Fidelity” (PvuII and EcoRI) and other restriction enzymes, T4 polynt kinase (PNK), and MuLV RT were from New England Biolabs. DNase (deoxyribonuclease)-free RNase (ribonuclease), ribonucleotides, and deoxyribonucleotides were obtained from Roche. RNase free-DNase I was from United States Biochemical. Rapid DNA ligation kit, RNasin (RNase inhibitor), and the phiX174 HinfI digest DNA ladder was from Promega. Radiolabeled compounds were from PerkinElmer. Pfu DNA polymerase was from Stratagene. DNA oligonucleotides were from Integrated DNA Technologies. G-25 spin columns were from Harvard Apparatus. RNeasy RNA purification and the Plasmid DNA Miniprep kits were from Qiagen. X-gal was from Denville Scientific, Inc. IPTG and media were from Gibco, Life Technologies. All other chemicals were obtained from Fisher Scientific, VWR, or Sigma. HIV RT (from HXB2 strain) was prepared as described [64 (link)]. The HIV RT clone was a generous gift from Dr. Michael Parniak (University of Pittsburgh). This enzyme is a non-tagged heterodimer consisting of equal proportions of p66 and p51 subunits. Aliquots of HIV RT were stored frozen at −80°C and fresh aliquots were used for each experiment.
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