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6 protocols using ripa lysis buffer kit

1

Western Blot Analysis of Inflammatory Markers

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As described previously,2, 7 cell lysates were prepared from FLS with RIPA lysis buffer kit (Beyotime Biotechnology), and the protein concentrations were quantified using a BCA protein assay kit (Thermo Scientific). Next, 8%–15% SDS‐PAGE gels were used to separate the cell lysates, and the samples were transferred to polyvinylidene fluoride (PVDF) membranes (Millipore). Subsequently, the membranes were incubated with primary antibodies anti‐IL‐1β, IL‐6, TNF‐α, TLR4, MyD88 (Abcam) and β‐actin (Proteintech) overnight at 4°C. After washing thrice with TBST, the membranes were incubated with Horseradish Peroxidase (HRP)‐labelled secondary antibodies (Proteintech) for 1 h at room temperature. Images were developed after reaction with a high‐sensitivity chemiluminescence reagent (Proteintech).
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2

Western Blot Analysis of Protein Markers

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Total protein was extracted using the RIPA lysis buffer kit (Beyotime, Shanghai, China), and total protein was mixed with 1x loading buffer. 10% SDS-PAGE gel electrophoresis was performed, and samples were transferred onto PVDF membranes (Millipore Corp. Billerica, MA, USA). Then, membranes were incubated with 5% skim milk and incubated with primary antibodies overnight at 4°C. Membranes were then incubated with secondary peroxidase-conjugated antibodies for 1 h at room temperature. Finally, a SuperSignal chemiluminescent substrate (Millipore, Billerica, MA, USA) was used to visualize protein bands. Primary antibodies for this study were specific for CA12 (Boster, Cat. No. A04063, 1 : 1000), LONRF3 (GeneTex, Cat. No. GTX112150, 1 : 2000), MAP2 (Boster, Cat. No. A01201, 1 : 2000), THBS1 (Boster, Cat. No. PB0471, 1 : 2000), PPID, E-cadherin (Beyotime, Cat. No. AF6759, 1 : 1000), N-cadherin (Beyotime, Cat. No. AF5237, 1 : 800), aggrecan (Abcam, Cat. No. ab3778, 1 : 1000), Col2A1 (Boster, Cat. No. A00517, 1 : 2000), MMP13 (Proteintech, Cat. No. 18165-1-AP, 1 : 3000), ADAMTS4 (Proteintech, Cat. No. 11865-1-AP, 1 : 600), and GAPDH (Abcam, Cat. No. ab9485, 1 : 2000). GAPDH was used as internal control.
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3

Protein Quantification in Fish Tissues

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According to the user-instruction of the RIPA Lysis Buffer Kit (Beyotime, Shanghai, China), 100 µL of lysis buffer was added to 1 × 106 peritoneal cells pellet or 10 mg tissue. After ultrasonication for 20 min, the lysate was centrifuged at 12000 × g for 30 min, and then the protein concentration in the supernatant was adjusted to 1mg mL-1 by using the BCA kit (EpiZyme, Shanghai, China). Twenty microliters of the cell or tissue (head kidney, spleen, gill, skin, muscle, and liver) lysates went through SDS-PAGE and transferred onto polyvinylidene fluoride (PVDF) membrane (Merck Millipore, Darmstadt, Germany). Then the membranes were blocked with 5% BSA and incubated with anti-rPoMPO, anti-Trx, or anti-GAPDH Abs (latter ab: Abclonal, Wuhan, China). After washing three times with PBST, the membranes were incubated with goat anti-mouse IgG-HRP or goat anti-rabbit IgG-HRP (Sigma, St. Louis, Mo, USA) diluted with 5% BSA at 37 °C for 45 min. Finally, the bands were detected with ECL Enhanced Kit (Abclonal, Wuhan, China) in a chemiluminescence detection instrument (Vilber, Ile-de-France, France). The semi-quantification of protein bands from homogenized PerCs priority subjected to LPS (100 µg per individual (N = 3)), Sigma, St. Louis, Mo, USA) at different time points was analyzed using Image J software (34 (link)).
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4

Quantifying Terminal Colon Protein Expression

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The terminal colon proteins of mice were extracted by RIPA Lysis Buffer kit (Beyotime, China). The extracted proteins were quantified by BCA Protein Assay Kit (Epizyme, China), and the protein expression was analyzed by Western blotting assay. Membranes were incubated overnight at 4 °C with the primary antibodies VIP (DF6627, Affinity Biosciences, China) and GAPDH (AF7021, Affinity Biosciences, China) mixed by primary antibody diluent (Epizyme, China) and incubated with Goat Anti-Rabbit IgG (H + L) HRP (S0001, Affinity Biosciences, China) subsequently. Immunodetected proteins were visualized using YosiSuper West Pico PLUS Chemiluminescent Substrate Kit (Yoshi Bio, China). The protein expression was quantified using the ImageJ software (version 1.53 s; ImageJ can be downloaded from https://imagej.net/ij/download.html).
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5

Western Blot Profiling of Cellular Proteins

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Tissue samples and cultured cells were lysed with a RIPA lysis buffer kit (P0013B, Beyotime, Haimen, China). Proteins were quantified using a bicinchoninic acid protein quantification kit (P0010S, Beyotime). Cell lysates were separated electrophoretically on 10% or 15% SDS-PAGE and transferred onto PVDF membranes (EMD Millipore, Billerica, MA, USA). These membranes were then incubated with rabbit monoclonal antibodies against BAX, BCL2, MCM2, PCNA, FOXQ1, and GAPDH (Proteintech, Rosemont, IL, USA) after being blocked with 5% skim milk for 2 h at room temperature. The membranes were then incubated with anti-rabbit IgG (H+L) (Cell Signaling Technology, Danvers, MA, USA) for 1 h at room temperature. Finally, signals were detected using an enhanced chemiluminescence kit (P10100, NCM Biotech). All results were analyzed using the ImageJ software (National Institutes of Health, Bethesda, MD, USA), and the densities of target bands were normalized to GAPDH.
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6

Western Blot Analysis of Protein Expression

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For western blot analysis, cell lysates were prepared from cell lines or tissues with a RIPA lysis buffer kit (P0013B, Beyotime, China), and the protein concentrations were quantified using a Beyotime protein assay (P0010, Beyotime, China). Whole-cell proteins were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride membranes (Millipore, USA). The blots were blocked with 5% skim milk powder in TBST for 1 h at room temperature and incubated overnight with the following primary antibodies: TRAF3IP3 (ER65081, Huaan Bio, China, 1:1000), ERK (#4695, cst, 1:1000), p-ERK (#4370, cst, 1:2000), and GAPDH (#5174, 1:20000). Following three washes with TBST buffer, the membranes were incubated with secondary goat anti-rabbit (#7074, cst, 1:5000) or goat anti-mouse antibodies (#7076, cst, 1:5000) for 1 h at room temperature, followed by three washes with TBST buffer. Signals were detected using an enhanced chemiluminescence kit (Thermo, USA) and exposed to a film (4741023953, Guangxi Juxing Medical Instrument Co., Ltd). The protein density was normalized to that of GAPDH.
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