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70 protocols using cary 50 bio uv vis spectrophotometer

1

Carbonic Anhydrase Activity Assays

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For assessment of carbonic anhydrase (carbonate hydrolyase, EC 4.2.1.1) activity, mantle edge tissue was homogenized as described in Ivanina et al., 2013. CA activity was determined as acetazolamide (AZM)‐sensitive esterase activity with 1.5 mM of p‐nitrophenyl acetate as a substrate (Gambhir et al., 2007) using a temperature‐controlled spectrophotometer (VARIAN Cary 50 Bio UV–Vis spectrophotometer). In a separate set of experiments, CA activity was measured at different temperatures in an environmentally relevant range (5–35°C) in the gill, mantle, adductor muscle, and hepatopancreas of the control mussels to characterize the tissue‐dependent capacity and temperature sensitivity (determined by apparent activation energy (Ea) and Arrhenius breakpoint temperature (ABT)) of CA activity. Ea was determined from an Arrhenius plot of ln(Vmax) against 1/T (K−1), and ABT was determined as a point when the slope of Arrhenius plot significantly changed using an algorithm for multi‐segment linear regression (Oosterbaan, 2011).
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2

TACC3 Regulation of Microtubule Polymerization

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The time-dependent microtubule polymerization of αβ-tubulin (10 μM) in the absence and presence of purified recombinant TACC3 (500–838) WT vs. purified recombinant mutant proteins (10 μM each) was assessed at 37 °C by measuring the turbidity at 360 nm using a Varian Cary 50 BIO UV VIS spectrophotometer [33 (link)]. Briefly, the His-tagged TACC3 (500–838) WT, or His-TACC3 (500–838) S558A or His-TACC3 (500–838) S558D proteins were mixed with αβ-tubulin in PEM buffer (50 mM PIPES, 1 mM EGTA and 1 mM MgCl2, pH 6.8) and then GTP (1 mM) was added to the mixtures to induce microtubule polymerization. Microtubule polymerization of only αβ-tubulin (control) in the absence of any TACC3 proteins was induced by 10% DMSO.
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3

Determination of Total Phenolic Content

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As described earlier [25 ], Folin–Ciocalteu reagent was utilized to determine the total PCs of the extracts. A Cary 50 Bio UV-Vis spectrophotometer was used by Varian to measure the samples against a reagent blank at 765 nm. To 0.2 mL of the sample, phenolic Folin–Ciocalteu’s reagent was added (1:1) along with DI water (0.6 mL). After 5 min, saturated Na2CO3 solution (8%w/v in water) was further poured to the mixture, and made up the volume of 3 mL with DI water. The sample mixture was then kept in the dark for 30 min. After centrifuge, the absorbance of blue color samples were measured at 765 nm. The PC content was measured based on the gallic acid equivalents (GAE/g) of dry plant material using the standard curve (5–500 mg/L, Y = 0.0027x − 0.0055, R2 = 0.9999). Triplicate measurements were performed for all the analyses.
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4

Characterization of Nanomaterials

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Raman measurements were performed on a commercial system (Jobin-Yvon Horiba LabRam) using a 532 nm laser for excitation. Photoluminescence measurements were performed using a 488 nm laser and a spectrometer (Princeton Instruments SP-2500i) with a liquid nitrogen cooled camera (PiXIS/Pylon/Spec-10:256). Broadband absorbance measurements were performed using a Varian Cary 50 Bio UV–vis spectrophotometer.
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5

Quantifying Riboflavin Conjugation in Hydrogels

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R-0.6 and R-1.2 PβAE gel discs were cut in 1-cm discs, weighed and incubated in 1mg/ml riboflavin-DMSO solution at 37°C and allowed to react for various durations of time up to 48 hours. After 6, 12, 24 and 48 hours, gels were taken out, washed twice in DMSO to remove unreacted riboflavin followed by a single wash in anhydrous acetonitrile in order to leach out residual DMSO. The gel discs were then freeze-dried overnight to remove any residual solvents. The next day, each gel disc sample was placed in separate wells of a 12-well plate and read at 444 and 600 nm using Varian Cary 50 Bio UV-Vis spectrophotometer. Absorbance at 600 nm was subtracted from absorbance value at 444 nm as a baseline correction to obtain the absorbance only due to riboflavin conjugation and not the disc thickness/optical density.
Next, the riboflavin conjugated gel discs were degraded in PBS (35 mg gel/ ml of PBS) for gels to undergo hydrolysis and release pure riboflavin. The degradation products in PBS were analyzed once again under UV-Vis at 444 nm and riboflavin concentrations were calculated using standard calibration curve.
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6

Comprehensive Spectroscopic Characterization of Compounds

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IR spectra
were recorded as a dry film on a Bruker Alpha II spectrometer or a
Bruker Invenio S spectrometer equipped with an HTS-XT accessory. UV
spectra were recorded as methanol solutions on a Varian Cary 50-Bio
UV/vis spectrophotometer. NMR spectra were recorded at 25 °C
on a 600 MHz Bruker Avance III HD spectrometer, equipped with a triple
resonance 5 mm CPP TCI cryo-probe, and operating at a frequency of
600.0 MHz for the 1H nucleus and 150.9 MHz for the 13C nucleus. All 2D NMR experiments were acquired with non-uniform
sampling (NUS) set to 40% (for 1H–1H
detected experiments) or 35% (for 1H–13C detected experiments). 1H and 13C NMR chemical
shifts were referenced to the solvent peak for DMSO-d6 at δH 2.50 δC 39.50.
NMR FID processing and data interpretation was done using MestReNova
software, version 14.2. High-resolution mass spectra were recorded
on an Agilent 6545 Accurate-Mass Q-TOF LC/MS system (1290 Infinity
II) equipped with a dual AJS ESI source. Semi-preparative scale HPLC
purification was performed with either a Gilson HPLC purification
system equipped with a GX-281 liquid handler, a 322-binary pump, and
a 172-photodiode array detector or a Waters Prep LC system, equipped
with a Delta 600 pump and a 996-photodiode array detector. All solvents
used for chromatography, UV, and MS were HPLC grade, and the H2O was Millipore Milli-Q PF filtered.
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7

Optical and Structural Characterization of Materials

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Optical characterization was performed
on a Cary 50 Bio UV–vis spectrophotometer (Varian, Inc.), and
photoluminescence spectroscopy was performed on a Cary Eclipse fluorescence
spectrophotometer (Varian, Inc.). The excitation wavelength was 400
nm. The powder X-ray diffraction (XRD) measurements were performed
using a D2 PHASER (Bruker, Inc.) with a Cu radiation source. Samples
were prepared by drop-casting purified products on a zero-diffraction
quartz holder or by addition of dried powders. Transmission electron
microscopy (TEM) was performed on a JEM 1400 (JEOL, Inc.) operated
at 120 kV using samples drop-cast onto carbon-coated Cu grids.
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8

Quantifying PEG Content in Nanogels

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Analysis of PEG content in nanogels was performed using the barium-iodide assay [29 ]. To carry out the assay, two solutions were prepared. A) 60 mg/ml barium chloride in 1.2 N HCl (HCl stock diluted in DI water), B) potassium iodide and iodine in DI water with final concentration of 20 and 12.5 mg/ml respectively. Separately, 1 mg of nanogels was rapidly hydrolyzed in 500 µL of 5 N NaOH for 4 hours at 80o°C. Hydrolyzed nanogels were neutralized by addition of 500 µL of 5 N HCL. PEGMEMA4000 dissolved in DI water was used for standard calibration within the range of 0–10µg per well in a 96 well plate. 20 µL of the hydrolyzed nanogel solution was added to the wells. Sample and the calibration volumes were diluted to 170 µL with DI water. 40 µL of solution A was then added to each well followed by mixing. 40 µL of solution B after doing 1/5th dilution was added subsequently to all the wells and mixed. The reaction was allowed to develop for 10 minutes after which absorbance was recorded at 550 nm using Varian Cary 50 Bio UV-Vis spectrophotometer. Calibration curve of PEG (5000 MW) was used as a calibration standard.
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9

Recombinant SgChiC Protein Expression in E. coli

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A single colony of recombinant E. coli BL21(DE3) harboring pET22-b(+)::SgchiC was inoculated in 10 mL Luria Bertani (LB) broth and cultivated at 37°C and 200 rpm for 18 hours. 10 mL of the culture was used to inoculate a 1 L LB broth supplemented with 100 μg/mL of ampicillin. Cultures were maintained at 37°C until cells were at mid log phase and attained an A600 of ~0.6, monitored with a Varian Cary 50 Bio UV-Vis spectrophotometer. Expression of recombinant r-SgChiC was then induced with IPTG to a final concentration of 0.2 mM and the culture was further cultivated for 2 hours at 30°C. Cultures were harvested by centrifugation at 8000 rpm (F-34-6-38 rotor in a 5804R Eppendorf centrifuge) for 10 min and pellets were either stored at -20°C or washed immediately. Cell pellets were re-suspended in wash buffer (WB) (50 mM Tris-HCl pH 8.0, supplemented with 0.3 M NaCl) and then disrupted by sonication for 3 minutes with 30 secs pulse at 40% power. The resulting lysate was separated by centrifugation at 8000 rpm and 4°C for 20 minutes. The presence of the target protein in the insoluble fraction was subsequently analyzed by SDS-PAGE.
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10

Antioxidant Potential of Curcumin Nanoparticles

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It was important to assess that the released curcumin from CNGs was still active with its antioxidant potential intact as its phenolic groups were chemically altered during the nanoparticle synthesis. Therefore, trolox equivalent antioxidant capacity (TEAC) assay was performed in order to verify the antioxidant potential or radical scavenging property of released degradation products. TEAC is a colorimetric assay based on scavenging of 2, 2′-azinobis-(3-ethylbenzothiazoline-6-sulfonate) radical anions (ABTS.-) in presence of any antioxidant. Briefly, 7 mM ABTS radical cation stock solution was prepared by mixing 1 ml of 8 mg/ml of ABTS solution with 1 ml of 1.32 mg/ml of potassium persulfate solution in DI water overnight. This concentrated ABTS radical stock solution was diluted in PBS to an absorbance of 0.4 AU at 734 nm to prepare working solution after baseline correction. Trolox, with known concentrations ranging from 0 to 0.27 mM, was used for calibration. The assay was carried out in a 96-well plate and 10 μl of the sample was added to each well, followed by 200 μl of ABTS radical working solution. Five minutes later, absorbance was read at 734 nm using Varian Cary 50 Bio UV-Vis spectrophotometer. A trolox calibration curve was used to determine equivalent trolox concentrations in the supernatant degradation products.
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