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158 protocols using innotest

1

Cerebrospinal Fluid Biomarker Analysis for Alzheimer's Diagnosis

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The details of the CSF sample collection and analytic processing are described elsewhere4 (Shaw et al., 2009 (link)). For the AT (N) grouping of the ADNI cohort based on CSF values, we used the archived data set “UPENNBIOMK_MASTER.csv.” A cutoff value of 192 pg./ml was used to determine Aβ42 status in CSF, a cutoff value of 23 pg./ml was used for pTau181 status, and a cutoff value of 93 pg./ml was used for tTau status (Shaw et al., 2009 (link)). If multiple CSF values were reported at baseline, we used the median value of these results. The details of CSF sample collection, analytical processing, and cutoff values for the Erlangen cohort are described elsewhere (Oberstein et al., 2022 (link)). In short, the cut-offs were calculated by maximizing the respective Youden index of results of the different ELISAs for Aβ42, pTau, and tTau in CSF. A cut-off value of 0.05 was used for the determination of the status of the Aβ42/Aβ40 ratio, a cut-off value of 600 pg./ml (INNOTEST®, Innogenetics) or 620 pg./ml (IBL) for Aβ42 status, a cut-off value of 60 pg./ml (INNOTEST®, Innogenetics) and 50 pg./ml (INNOTEST®, Fujirebio) for pTau181 status, and a cut-off value of 320 (INNOTEST®, Fujirebio) or 300 pg./ml (INNOTEST®, Innogenetics) for tTau status.
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Standardized CSF Tau Protein Assays

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The CSF total tau and P-tau 181 assays were conducted at the Sahlgrenska University Hospital in Sweden, as previously described [25] (link). Briefly, P-tau 181 was measured by a gold-standard sandwich ELISA (INNOTEST, Fujirebio) using antibodies HT7 for capture and AT270 for detection and a synthetic custom phosphopeptide phosphorylated threonine 181 (P-tau181) as the standard calibrator [31] (link). Limit of detection of this setting is 15.6 pg/mL. Intra-assay and inter-assay coefficient variations are below 10%. The lower limit of quantification was determined to be 25 pg/mL. CSF total tau was measured using a similar gold-standard ELISA protocol (INNOTEST, Fujirebio), based on using the monoclonal mid-domain antibodies AT120 for capture and HT7 and BT2 for detection [32] (link). Samples showing coefficients of variation higher than 20% were remeasured. CSF tau was also measured by Quanterix SIMOA at NYUSOM, as described previously, in a subset of the normal subjects to compare the 2 assays.
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Cerebrospinal Fluid and Amyloid PET Biomarkers

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We considered cerebrospinal Aβ1-42 analysis or amyloid positron emission tomography imaging as markers of amyloidosis. Lumbar puncture was carried out in the outpatient clinic according to standard procedures, and cerebrospinal fluid analysis was performed using an ELISA assay (INNOTEST, Innogenetics, Ghent, Belgium) [27 (link)]. According to our internal cutoff scores, a cerebrospinal fluid AD-like profile was defined as cerebrospinal fluid Aβ1-42 ≤ 650 pg/mL (along with cerebrospinal fluid total Tau ≥ 400 pg/mL).
Amyloid positron emission tomography imaging was acquired using 370 MBq (10 mCi) of 18F-florbetapir or 18F-flutemetamol, and visual readings were performed by a nuclear medicine physician who was blinded to the patients’ diagnosis, following the procedures provided by the ligand manufacturer, as previously reported [9 (link)].
Cerebrospinal fluid Aβ1-42 dosage (along with Tau) and/or amyloid positron emission tomography results (“positive” vs. “negative”) were provided to the two raters in either step 2 or step 3, according to randomization.
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4

Amyloid-β Quantification by ELISA

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Amyloid-β (Aβ42) levels were measured using ELISA (Innotest®, Innogenetics, Ghent, Belgium). This assay was conducted at the Sahlgrenska Institute in Sweden.
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5

Assessing Alzheimer's Disease Pathology

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The presence of elevated cortical amyloid uptake and CSF pTau 181 levels was used to categorize participant’s AD-related neuropathology. Processed amyloid and CSF pTau values were provided by the Knight ADRC108 (link),109 (link). Mean cortical amyloid levels were measured with PiB, a PET imaging tracer that binds to fibrillar deposits of Aβ. A cutoff value of 1.42 SUVR using the cerebellar cortex as the reference region108 (link) was used to identify participants with elevated levels of amyloid deposits (amyloid PiB+, n = 47; PiB, n = 160). CSF pTau values were obtained by analyzing CSF samples using enzyme-linked immunosorbent assays (Innotest, Innogenetics110 (link)). Participants with a value above 67 pg/ml were categorized as having elevated levels of pTau (pTau+, n = 61; pTau, n = 176)109 (link). A large portion of the final sample had both of these variables available (n = 193 of 265 in the final sample); however, a subset was missing some form of AD-related pathology data (see Table 1 for missing data). Participants with one or more elevated AD-related pathology markers were categorized as positive for AD-related pathology.
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Biomarker Analysis of Alzheimer's Disease

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Blood samples were collected by venipuncture into BD vacutainer tubes containing EDTA between 8:00 and 10:00 A.M. The samples were centrifuged at 1500×g for 10 min, and aliquots of the plasma were stored at − 80 °C until use. The CSF samples were collected by a lumbar puncture on the same morning when blood samples were collected and after overnight fasting. Briefly, the samples were centrifuged at low speed to pellet any cellular debris, aliquoted in polypropylene tubes, and finally, frozen at − 80 °C. CSF Aβ42, total tau (T-tau), and phospho-tau (P-tau) were measured by enzyme-linked immunosorbent assay (ELISA) (INNOTEST, Innogenetics). The cutoff values for these biomarkers were determined in an independent cohort of AD patients and controls in our laboratory. The cutoff values for Aβ42, T-tau, and P-tau were as follows: < 600 pg/ml, > 425 pg/ml, and > 65 pg/ml, respectively. Patients with MCI were classified as negative for CSF biomarkers (all of them were normal) or positive for CSF biomarkers (all of them were positive). Patients with some positive CSF biomarkers were not considered in the study to avoid difficulties in interpreting the results.
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7

Cerebrospinal Fluid Biomarkers in FTLD

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CSF analytes of total tau and beta-amyloid1-42 were obtained using previously reported procedures and evaluated with either a sandwich ELISA 2 (INNOTEST, Innogenetics, Ghent, Belgium) or a LUMINEX xMAP platform (INNO-BIA AlzBio3, Innogenetics). A ratio of total tau to beta-amyloid (t-tau:Aβ) was generated across platforms using an autopsy-validated conversion factor that has been cross-validated across two independent series (Irwin et al., 2012 (link)). Specifically, it has been demonstrated that a t-tau:Aβ ratio above threshold (>0.34) is 95.5% accurate across two autopsy series (Irwin et al., 2012 (link)). In this study cohort 11 patients had autopsy or a genetic mutation consistent with FTLD pathology and all of them were correctly classified with CSF as having FTLD pathology. Using this threshold we identified 72 patients with a CSF profile not consistent with AD, which we presume is FTLD, and 21 patients had a CSF profile consistent with AD. Our cohort that contains 22.5% AD cases provides a representative sample that is consistent with previous reports suggesting that approximately 20–30% of clinical FTD cases have AD pathology (Harris et al., 2013 (link); Lee et al., 2011 (link)).
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8

Alzheimer's Biomarker Measurement Protocols

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Samples were analyzed using a Luminex xMAP platform (INNO-BIA AlzBio3™, Innogenetics, Ghent, Belgium) (n=52) or an ELISA assay (INNOTEST®, Innogenetics, Ghent, Belgium) (n=13), as described41 . Briefly, the xMAP platform utilized capture monoclonal antibodies (MAbs) 4D7A3 (Aβ1–42), AT120 (ttau), and AT270 (ptau) bound to color-specific beads. We used an assay sensitive to phosphorylation at threonine-181 since this is the Alzheimer’s Disease Neuroimaging Initiative standard for which the highly reliable Luminex method is available41 . Biomarker analytes were detected using reporting MAbs 3D6 (Aβ1–42) and HT7 (ttau, ptau). Some older samples were analyzed with an ELISA method, where MAbs for capturing and reporting ttau and ptau were AT120/HT7 and BT2, HT7/AT270, respectively. As described previously20 (link), ELISA values for Aβ also were measured using an “in house” method with the capturing MAb BAN-50, and the reporting MAb BC-05. Using an autopsy-validated formula40 (link), a linear regression model converted natural-log transformed raw CSF values from ELISA to an xMAP equivalent.
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9

Alzheimer's and Cognitive Impairment Biomarkers

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Human CSF samples were obtained from 15 AD (according to ICD-10 criteria [27 ], mean age ± SD = 67.87 ± 10.232), 20 mild cognitive impairment (MCI according to Winblad criteria [28 (link)], mean age ± SD = 65.65 ± 10.373) and 21 subjective cognitive impairment (SCI, no objective cognitive impairment, mean age ± SD = 57.48 ± 5.409) subjects from the Memory Unit, Geriatric Clinic, Karolinska University Hospital, Huddinge. As part of the diagnostic procedure these subjects were assessed by the mini-mental state examination (MMSE) test, and levels of phosphorylated tau (phosphorylation site threonine 181) was measured by enzyme-linked immunosorbent assay (ELISA) kits (INNOTEST®, Innogenetics, Ghent, Belgium). Brain tissue samples were obtained from 10 AD-patients (9 Braak stage 5–6 definite AD [29 (link)], and 1 Braak stage 3–4 probable AD), and 10 non-demented control subjects, all from the Brain Bank at Karolinska Institutet. There was no statistical difference in age or post mortem interval (PMI) between the AD and control group (see Table 1). Half of each brain was fixed in formalin and tissue samples embedded in paraffin. The other half was dissected according to region, frozen and stored at −80°C. The study has been approved by the regional ethics committee of Stockholm.
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10

Quantitative analysis of 14-3-3 and T-tau proteins

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These assays were performed as described27 (link). Briefly, protein 14-3-3 was evaluated semi-quantitatively by comparing the Western Blot signals of the tested sample in comparison to those of control samples (with a weak or a strong 14-3-3 signal, respectively). T-tau protein was quantitatively analyzed using commercially available kits based on a sandwich ELISA method, according to the manufacturer’s instructions (INNOTEST, Innogenetics, Gent, Belgium). Based on previous analyses27 (link), the cut-off value chosen for t-tau was 1250 pg/ml.
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