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3 protocols using anti bclx

1

RIPK1-Mediated Necroptosis Signaling

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Stimulated T cells were incubated in lysis buffer. For signaling complex analyses, cell lysates were pre-cleared with Protein G beads prior to immunoprecipitation with anti-RIPK1 antibody. Antibodies and reagents used for immunoprecipitation and immunoblotting studies included: anti-RIPK1, anti-Bim, anti-Bclx, (BD Biosciences), nec1, anti-Bcl2, β-actin (Merck chemicals), anti-RIPK3 (ProSci Incorporated), anti-ubiquitin, anti-Bax, anti-RIPK3 (Santa Cruz Biotechnology), anti-RIPK1, anti-A20 (Cell signaling Technology), QVD, ZVAD (Enzo Life Science).
Signaling studies in MEFs were performed as described19 (link). RIPK1 immunoprecipitations were performed using anti-RIPK1 (Cell Signaling) and Dynabeads M270 Epoxy (Invitrogen). K63-ubiquitin immunoprecipitations were performed using anti-K63 (Millipore) and Dynabead Protein A (Invitrogen). Studies of RIPK3 mutants in A20−/−Ripk3−/− MEFs were performed by generating RIPK3 lysine mutants, introducing mutant RIPK3-encoding cDNAs into GFP expressing lentiviral constructs, and infecting A20−/−Ripk3−/− MEFs with these viruses. Productively infected cells were FACS-sorted to obtain pure populations of RIPK3-expressing cells prior to being tested in necroptosis assays. Cell survival of MEFs was quantitated using the CellTiter-Glo Luminescent Cell Viability Assay per manufacturer’s instructions (Promega).
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2

RIPK1-Mediated Necroptosis Signaling

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Stimulated T cells were incubated in lysis buffer. For signaling complex analyses, cell lysates were pre-cleared with Protein G beads prior to immunoprecipitation with anti-RIPK1 antibody. Antibodies and reagents used for immunoprecipitation and immunoblotting studies included: anti-RIPK1, anti-Bim, anti-Bclx, (BD Biosciences), nec1, anti-Bcl2, β-actin (Merck chemicals), anti-RIPK3 (ProSci Incorporated), anti-ubiquitin, anti-Bax, anti-RIPK3 (Santa Cruz Biotechnology), anti-RIPK1, anti-A20 (Cell signaling Technology), QVD, ZVAD (Enzo Life Science).
Signaling studies in MEFs were performed as described19 (link). RIPK1 immunoprecipitations were performed using anti-RIPK1 (Cell Signaling) and Dynabeads M270 Epoxy (Invitrogen). K63-ubiquitin immunoprecipitations were performed using anti-K63 (Millipore) and Dynabead Protein A (Invitrogen). Studies of RIPK3 mutants in A20−/−Ripk3−/− MEFs were performed by generating RIPK3 lysine mutants, introducing mutant RIPK3-encoding cDNAs into GFP expressing lentiviral constructs, and infecting A20−/−Ripk3−/− MEFs with these viruses. Productively infected cells were FACS-sorted to obtain pure populations of RIPK3-expressing cells prior to being tested in necroptosis assays. Cell survival of MEFs was quantitated using the CellTiter-Glo Luminescent Cell Viability Assay per manufacturer’s instructions (Promega).
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3

Western blot analysis of apoptosis-related proteins

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Cells were lysed in RIPA buffer containing a protease inhibitor cocktail (Sigma-Aldrich) and equal amounts of protein were separated on SDS-PAGE gels, transferred to Immobilon membranes and blocked. Immunoreactive bands were visualized using SuperSignal West Femto chemiluminescent substrate (Pierce, Rockford, IL, USA) and images were captured using the VersaDoc imaging system and Quantity One software (Bio-Rad, Hercules, CA, USA). The following antibodies diluted 1:1000 were used: anti-survivin (ab76424; Abcam, Milton, Cambridge, UK); anti-BIM and anti-Bclx (559685 and 610211, respectively; BD Pharmingen, San Diego, CA, USA); anti-BAX and anti-cleaved caspase-3 (#2772 and #9664, respectively; Cell Signaling Technology, Beverly, MA, USA); anti-tBID and anti-FLIP (AF860 and AF821, respectively; R&D Systems); anti-GAPDH (MA5-15738; Sigma-Aldrich); anti-FAA and anti-Ub (sc-66223 and sc-8017, respectively; Santa Cruz Biotechnology, PaloAlto, CA, USA). Secondary peroxidase-conjugated antibodies diluted 1:2000 were as follows: anti-goat (HAF109; R&D Systems), anti-rabbit and anti-mouse (NA934 and NXA931, respectively; GE Healthcare, Chicago, IL, USA) and anti-chicken (ab131366; Abcam).
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