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47 protocols using cd4 apc h7

1

Comprehensive CD4+ T Cell Profiling

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One day post isolation FACS analysis was used to determine the percentages of various CD4+ T cell subsets, like naïve (TN), effector memory (TEM), central memory (TCM), T helper 17 cells (Th17), follicular helper T cells (Tfh) and regulatory T cells (Treg). For this the following antibodies were used: CD4-APC H7 (BD Biosciences, 560158), CD45RA-PE Cy7 (BD Biosciences, 560675), CD45RO-PerCP Cy5.5 (BD Biosciences, 560607), CCR7-APC (BioLegend, 353214), CCR6-PE (BD Biosciences, 559562), CXCR5-PerCP Cy5.5 (BioLegend, 335001), CD127-PE Cy7 (BD Biosciences, 560822), CD25-Horizon V450 (BD Biosciences, 560355). Further, the expression of different receptors on unstimulated as well as stimulated CD4+ T cells was determined using the following antibodies: CD4-APC H7, TCR-CD3-APC H7 (BD Biosciences, 560275), CD28-PerCP Cy5.5 (BD Biosciences, 560685), MHC-I-Horizon V450 (BD Biosciences, 561346), FAS-PE (BD Biosciences, 556641), FAS-L-PE (BioLegend, 306407), PD1-APC (BD Biosciences, 558694), PD1-L-PE Cy7 (BD Biosciences, 558017), TRAIL-PE (BD Biosciences, 550516), CTLA-4-PE (BD Biosciences, 555853), CD69-Horizon V450 (BD Biosciences, 560740), CD25-PE Cy7 (BD Biosciences, 557741), CXCR4-PerCP Cy5.5 (BD Biosciences, 560670) and CCR5-PE Cy7 (BD Biosciences, 557752). Cells were analyzed using the BD FACS Canto II with FACSDiva software.
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2

Phenotypic Analysis of B-Cell Subsets

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Purified PBMCs were thawed and stained with the following conjugated monoclonal antibodies: CD19- and CXCR5-Alexa 488, CD27-PerCP-Cy5.5, CD21- and CD45RO-APC, IgD, and CD4-APC-H7 (all from BD Biosciences, Buccinasco, Italy) and CD3- and CD10-Pe/Cy7 (BD Biosciences and Biolegend, respectively). Multicolor flow cytometry was performed on a FACSCanto, interfaced to a FacsDiva software (BD Biosciences) and analyzed through Flow-Jo software version 8.8.3 (Three Star Inc., Ashland, Oregon, USA). The different CD19+ B-cell subpopulations were defined as follows: resting memory (CD27+CD21+), switched memory (CD27+IgD−), unswitched-memory (CD27+IgD+), naïve (CD27−IgD+), double negative (DN) (CD27−IgD−), and mature activated (MA) (CD10−CD21−).
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3

Intracellular Cytokine Staining of T Cells

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The cells were thawed and washed with PBS first and PBS/1% BSA later and then stained with surface antibodies for 30–60 minutes. Surface antibodies used were CD3 - Amcyan, CD4 - APC-H7 and CD8 - PE-Cy7 (all from BD Biosciences). The cells were washed and permeabilized with BD Perm/Wash buffer (BD Biosciences) and stained with intracellular cytokines for an additional 30 min before washing and acquisition. Cytokine antibodies used were IL-10 (BD Pharmingen), IL-19, IL-24 and IL-26 (R&D Systems). Flow cytometry was performed on a FACS Canto II flow cytometer with FACSDiva software v.6 (Becton Dickinson). The lymphocyte gating was set by forward and side scatter and 100,000 lymphocyte events were acquired. FMO gating was used for intracellular cytokine detection. Data were collected and analyzed using Flow Jo software. All data are depicted as frequency of CD4+ or CD8+ T cells expressing cytokine(s). Values following media stimulation are depicted as baseline frequency while frequencies following stimulation with antigens or anti-CD3 are depicted as net frequencies (with baseline values subtracted).
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4

Phenotyping of Th cell subsets

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Peripheral blood mononuclear cells (PBMCs) were isolated from EDTA-treated whole blood samples by density gradient centrifugation using Lymphoprep ™ (Fresenius Kabi, Oslo, Norway).
Peripheral blood lymphocytes (PBL) were isolated and stained with the following fluorochrome-conjugated monoclonal antibodies: CD4-APC-H7, CXCR3-PE, CCR6-BB515, PD-1-PE-Cy7 and ICOS-BV450 (all from BD biosciences, San José, CA, USA)  (Mallett et al., 2019 (link); Mousset et al., 2019 (link)). Acquisition of PBLs was performed with a FACS CANTO II flow cytometry (BDbiosciences) and analyzed with Flow-Jo software v10.6.2. Gating strategy is shown (Figure S1).
Cells CXCR3+/CCR6- gated from CD4 were considered Th1 cells, CXCR3-/CCR6+ cells were considered as Th17 and CXCR3-/CCR6- as Th2. Regarding the activation grade, cells PD-1-/ICOS- were considered as quiescent Th cells, PD-1-/ICOS+ cells as early-activated cells, PD-1+/ICOS+ as late activation markers and PD-1+/ICOS- as exhausted or senescent cells (Mallett et al., 2019 (link)).
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5

Multiparametric Flow Cytometry Profiling

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Whole blood was drawn in EDTA tubes and the cells were incubated with fluorochrome-conjugated antibodies against human CD3-FITC, HLA-DR-FITC, CD45RA-FITC, CD8-PE, CD16+56-PE, CD69-PE, CD28-PE, CD3-PerCP, CD45-PerCP, CD45RO-PerCP-Cy5.5, CD4-PE-Cy7, CD25-PE-Cy7, CD25-APC, CD39-APC, CD62L-APC, CD8-APC-H7, CD4-APC-H7, CD3-Horizon V450, CD56-Horizon V450, all from BD Biosciences (San Jose, USA). Anti-Foxp3-PE was purchased from eBioscience (San Diego, USA) and Helios-Pacific Blue from Biolegend (San Diego, USA). Lymphocyte subpopulations from peripheral blood were measured by 4- or 7-color combinations. TruCount tubes (BD Biosciences) were used for assessment of absolute numbers (cells/μl) of leukocytes (CD45), and major lymphocyte populations; T lymphocyte (CD3), T helper (CD4), T cytotoxic (CD8), B (CD19) and NK (CD16+CD56) cells, as described by the manufacturer. Absolute numbers of subpopulations were derived from the major populations. Proportions of major populations were given as % of lymphocytes and proportions of subpopulations were given as % of their parent population.
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6

Multiparametric Flow Cytometric Immunophenotyping

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Peripheral blood mononuclear cells were washed in PBS with 1% BSA (bovine serum albumin) and incubated for 30 min at 25°C with fluorescently labeled antibodies specific for B and T cells. Subsequently, samples were centrifuged and resuspended in propidium iodide (PI) solution (1 μg/ml PI and 10 μg/ml RNase A in PBS) and analyzed using BD FACS Canto II flow cytometer (BD Biosciences). The B cell panel included the following antibodies: IgA FITC, IgD PE, CD3 PerCP-Cy5.5, CD27 APC-H7, CD19 PE-Cy7, β7 APC, and CD38 BV421 from BD Biosciences. The T cell panel included the following antibodies: CXCR5 BV421, CXCR3 PE, CD4 APC-H7, CD3 FITC, CD196 APC, CD279 (PD-1) BV510, and CD45RA PE-Cy7 from BD Biosciences. Results were analyzed using FACSDiva software (BD Biosciences) and reported as MFI, reflecting the levels of cell surface antigens and relative cell count with respect to hierarchically higher cell populations (%). Cellular aggregates were eliminated using morphology parameters (FSC-A and FSC-H) (see Supplementary Figures 1, 2 for gating strategy).
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7

Immunophenotyping of Cryopreserved PBMCs

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Peripheral blood mononuclear cells (PBMC) were obtained from whole blood using Histopaque® and Ficoll (Sigma-Aldrich, Saint Louis, MO, USA) different density gradients. These cells were cryopreserved, and then thawed at the time of each assay. Then, was used a concentration of 2 × 105 viable cells/mL, and submitted to immunophenotyping assay with surface antibodies for 20 min at 2–8 °C. After, the cells were washed with phosphate buffer plus fetal bovine serum (FBS) (PBS pH 7.4 at 2% FBS), and centrifuged at 400× g for 5 min. After centrifugation, cells were fixed with 1% paraformaldehyde solution and subsequently acquired in a flow cytometer (LSR FortessaTM, BD Biosciences, Franklin Lakes, NJ, USA). The analysis was performed using Flow Jo software v10.6 (BD Biosciences).
The anti-human antibodies used in the immunophenotyping assay were: panel I (activation)-CD3-FITC, CD4-APCH7, CD8-BV605, CD38-PECy7, OX40-BV711 and panel II (memory)–CD3-APC-Cy7, CD4-BV421, CD8-BV605, CD45RA-APC, CCR7-BV510 (BD Biosciences).
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8

Comprehensive Immune Cell Profiling

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The following pre-conjugated antibodies were used for flow cytometry: CD56-PE (clone 5.1H11), CD56-PC7 (clone 5.1H11), CD56-PacBlue (clone 5.1H11), CD3-FITC (clone OKT3), CD16-BV786 (clone 3G8), CD57-PE (clone HCD57), CD3-APC (clone OKT3), CD3-PacBlue (clone UCHT1), CD25-PE (clone PC61.5), PD-L1-APC (clone 29E.2A3), CD8-PC7(clone RPA-T8), IFNγ-Alexa647(clone 4S.B3), TNFα-PacBlue(clone Mab11) (BioLegend); CD45-APC(clone 2D1), CD45-eFluor450(clone 2D1), PD-1-eVolve655 (clone J105), FoxP3-FITC (clone PCH101), TNFα-eF450 (clone Mab11) (eBioscience); and CD4-APC-H7 (clone RPA-T4) (BD Biosciences). All samples were acquired on a CytoFlex flow cytometer and analyzed using CyteExpert or FlowJo software (v10.0.7).
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9

Flow Cytometry Analysis of Immune Cell Markers

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Flow cytometry was performed to assess the expression of DC- and T-cell surface markers as well as FluorDye signal intensity as described previously (34 (link)). For cell surface staining, directly labeled mAbs including CD14-FITC, CD25-V450, CD69-APC-Cy7, CD83-APC, CD86-PE, B7-H1-PE, CD3-PE, CD4-APC-H7, CD8-V500 (all from BD Biosciences, Heidelberg, Germany), and CD80-FITC (Beckman Coulter Inc, Indianapolis, USA) were used. In brief, cells were collected, washed with PBS and resuspended in FACS buffer (PBS supplemented with FCS, EDTA). The cell suspension was blocked for 10 min with human FCR blocking reagent (Miltenyi Biotech GmbH), incubated for 30 min with antibodies, washed 2× and re-suspended in FACS buffer. Afterwards, each sample was analyzed by a BD FACSCanto II flow cytometer and FlowJo software (both BD Biosciences). Results were expressed as medium fluorescence intensity (MFI) or percentage of cells.
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10

Murine Hematopoietic Cell Immunophenotyping

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Cells were isolated from bone marrow, spleen, and thymus of mice, and stained with the following antibodies: B220 (APC; BD Pharmingen), cKit (PE-Cy7; BioLegend, San Diego, CA), CD3 (PE-Cy7; BD Bioscience), CD4 (APC-H7; BD Pharmingen), CD8 (ECD; Beckman Coulter), CD11b (PE; BD Bioscience), CD16/32 (PE; eBioscience, San Diego, CA), CD34 (FITC; BD Pharmingen), CD45.2 (PerCP-Cy5.5; BD Pharmingen), CD48 (APC-Cy7; BD Pharmingen), CD127 (ECD; BD Pharmingen), CD150 (PerCP-Cy5.5; BioLegend), Gr1 (APC-Alexa700; BD Bioscience), Lineage Cocktail (APC; BD Pharmingen), Sca1 (Brilliant Violet 421; BioLegend). Dead cells were excluded using either DAPI or Vivid-Aqua (Invitrogen) staining. All data acquisition was performed on a LSRII (BD) flow cytometer, and results were analyzed using FlowJo v.8.8.7 (TreeStar).
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