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12 protocols using image pro plus image analysis system

1

Hippocampal Dentate Gyrus Cellular Analysis

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In the selected samples of the hippocampal dentate gyrus, the numbers of Ki-67-positive, TUNEL-positive, and caspase-3-positive cells were counted hemilaterally using a light microscope (Olympus, Tokyo, Japan). The area of the hippocampal dentate gyrus was measured using the Image-Pro Plus computer-assisted image analysis system (Media Cybernetics Inc., Silver Spring, MD, USA). These values were expressed as the numbers of cells per square millimeter in the hippocampal dentate gyrus. The detected bands were calculated densitometrically to characterize Bax, Bcl-2, BDNF, and TrkB expression using the Image-Pro Plus image analysis system (Media Cybernetics Inc.). Statistical analysis was performed with 1-way analysis of variance followed by the Duncan post hoc test. The results are expressed as the mean±standard error of the mean, and statistical significance was set at P<0.05.
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2

Quantifying Atherosclerotic Plaque Enhancement

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CEUS image quantification was performed to acquire the acoustic signals backscattered by the MBs. To assess the extent to which the 2 MBs enhanced the atherosclerotic plaques, we manually drew a region of interest (ROI) around the plaque and kept each ROI at almost the same size. The grayscale values within the ROI were quantified using the Image-Pro Plus Image Analysis System (Media Cybernetics, USA), and a time-intensity curve (TIC) was generated to compare the intensities of the signals from the 2 MBs in the atherosclerotic plaques.
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3

Apoptosis Mediator Expression Analysis

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Both Bax and Bcl-2 are important apoptosis mediators but play opposite roles. Bax is proapoptotic and BCL-2 is considered as antiapoptosis mediators. In the current study, expressions of Bax and Bcl-2 were determined by immunohistochemistry method. Briefly, sections were dewaxed. Muscle sections were then incubated with the primary antibodies overnight at 4°C. Primary antibodies included rabbit polyclonal antibody to Bcl-2 and rabbit monoclonal antibody to Bax from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The antibodies were used at dilutions of 1 : 50 for Bcl-2 and Bax. Then, the sections were incubated with two-step immunohistochemistry detection reagent (PV6001 and PV6002; Zhongshan Golden Bridge, Beijing, China) at 37°C for 30 minutes. A positive brown color appeared in the slices after 3,39-diaminobenzidine colorization. According to the distribution of positive cells in each section, we selected 5 different visions and calculated the average absorbance value of Bax and Bc1-2 using Image-Pro Plus image analysis system (Media Cybernetics, Rockville, MD, USA).
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4

Synaptic Protein Fractionation and Analysis

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The BLA was prepared for western blotting analysis using Syn‐PER Synaptic Protein Extraction Reagent (Thermo Fisher, USA), resulting in both a functional synaptosome fraction and a cytosolic fraction.
21 (link) The protein concentration was determined by using BCA. SDS–PAGE gels were used to separate the same amounts of proteins before transfer to PVDF membranes. The PVDF membrane was blocked with 5% skim milk or 3% BSA (bovine serum albumin) at room temperature for 2 h, and then incubated overnight at 4°C with anti‐SK2 (1:500; Alomone labs, Israel), anti‐PKA (1:1000 Abcam ab38949), anti‐pPKA (phospho S96, 1:1000 Abcam ab32390), anti‐MPP2 (1:1000; Abcam, USA), anti‐GAPDH (1:1000), or anti‐β actin (1:3000) primary antibodies. After washing with TBST, the PVDF membrane was incubated with an HRP‐conjugated secondary antibody (1:1000) for 45 min at room temperature. Protein bands were illuminated using the BeyoECL Moon kit and captured using the Image ProPlus image analysis system (Media Cybernetics, Inc., Rockville, MD, United States).
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5

Sciatic Nerve Regeneration Assessment

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At 8 weeks after surgery, a segment of sciatic nerve comprising the tissue 1 mm away from the proximal and distal anastomotic stoma of CEANA was resected (mainly to observe whether regenerated axons passed through the anastomotic scar), fixed with 10% formaldehyde, embedded with paraffin, and successively sliced into sections (each section spanning the area 2 mm away from the proximal and distal anastomotic stoma). The transverse sections were routinely stained with hematoxylin-eosin, cut into semi-thin sections, stained with toluidine blue and observed under the optical microscope (Olympus, Tokyo, Japan). A 3 mm-long sciatic nerve segment was cut 3 mm away from distal anastomotic stoma of the sciatic nerve on the surgical side. An identical sciatic nerve segment from the control side was cut as a normal control. The specimen was rinsed, fixed with glutaraldehyde, embedded with epon 812, sliced into ultrathin cross-sections, counterstained with uranium-lead and observed under transmission electron microscope (CM120, Oxoid, Basingstoke, UK). Using the Image-Pro Plus image analysis system (Media Cybernetics, Bethesda, MD, USA), the total number of myelinated nerve fibers was counted and the thickness of myelin sheath was measured.
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6

Multimodal Imaging for Cell Analysis

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Instruments used included: Optical microscope (Olympus Corp., Tokyo, Japan), CO2 incubator (Binder GmbH, Tuttlingen, Germany), laser confocal microscope with high sensitivity (Carl Zeiss, Inc., Oberkochen, Germany), PCR instrument (Thermo Fisher Scientific, Waltham, MA, USA), centrifuge with low temperature and high speed (Thermo Fisher Scientific), Image Pro-Plus image analysis system (Media Cybernetics, Inc., Rockville, MD, USA), infrared fluorescence imaging instrument (LI-COR Biosciences, Lincoln, NE, USA).
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7

Western Blot Analysis of SK2 Protein

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Rats were sacrificed approximately 2 h after adult CRD. The lower lumbar and upper sacral segment (L4–S4) was extracted and lysed with Syn-PERTM Synaptic Protein Extraction Reagent (1 mL/100 mg) containing PMSF. Cell lysis was centrifuged at 8.000 rpm for 10 min at 4°C. The supernatant (whole cell lysis) was collected and further centrifuged at 15,000 rpm for 20 min at 4°C. The supernatant (cytoplasmic fraction) were collected. RIPA lysis buffer (500 μL/200 mg) was added to the pellet (membrane fraction). The sample protein concentration was determined with BCA. Equal amounts of protein were separated by SDS-PAGE gels and transferred to the PVDF membrane. After blockade with 5% non-fat milk for 2 h at room temperature, the PVDF membrane was incubated with anti-SK2 (1:200) anti-GAPDH (1:1,000) or anti-Tubulin β (1:3,000) primary antibody at 4°C overnight. After TBST washing, the PVDF membrane was incubated with AP-conjugated secondary antibody (1:1,000) or HRP-conjugated secondary antibody (1:1,000) for 2 h at room temperature. Protein bands were illuminated using the BCIP/NBT alkaline phosphatase color development kit or BeyoECL Moon kit and captured by using Image ProPlus image analysis system (Media Cybernetics, Inc., Rockville, MD, United States).
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8

Immunocytochemical Analysis of Keloid Signaling

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Immunocytochemistry was conducted as described previously [6 (link)]. Briefly, keloid fragments (5 mm × 5 mm × 5 mm) were fixed in 4% paraformaldehyde at 4°C for 48 h, embedded in paraffin, sectioned at 4 μm thickness by Rotary Paraffin Microtome Slicer paraffin embedding machine (Media Cybernetics, USA), and stained with hematoxylin and eosin for routine examination. Subsequently, the keloid sections were incubated with antibodies against p-PI3K (1 : 100, mouse anti-human PI3K monoclonal antibody, Santa Cruz, CA, USA), PTEN (1 : 100, mouse anti-human PTEN (a2b1) monoclonal antibody, Santa Cruz, CA, USA), p-Akt (1 : 100, mouse anti-human Akt monoclonal antibody, Santa Cruz, CA, USA), or p-mTOR (1 : 100, mouse anti-human mTOR monoclonal antibody, Santa Cruz, CA, USA). Bound antibodies were visualized using 3,3′-diaminobenzidine (DAB) as a chromogen (ZSGB Bio Co., Ltd, Beijing, China), and the slides were counterstained with hematoxylin. The positive expression of p-PI3K, PTEN, p-Akt, and p-mTOR was evaluated in four randomly selected fields under a light microscope (Olympus Corp., Tokyo, Japan). The mean optical densities (MOD) of positive expression were quantified with the Image Pro-Plus image analysis system (Media Cybernetics, Inc., Rockville, MD, USA).
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9

Quantifying Cell Adhesion Markers

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Immunohistochemical staining was performed using PV two-step immunohistochemical detection kit (Beijing Shan Jinqiao Biological Technology Co., Ltd., Beijing China), integrin αv, vinculin and connexin43 positive cells were detected using mouse anti-rat integrin αv monoclonal antibody (1:50), mouse anti-rat vinculin monoclonal antibody (1:300) and rabbit anti-connexin43 polyclonal antibody (1:200) (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA) respectively. Briefly, sections were incubated with 3% H2O2 at 37°C for 30 min, repaired by microwave, blocked with dripped 10% goat serum for 30 min, incubated with primary antibody at 4°C overnight, visualized with a PV two-step immunohistochemical detection kit, and re-stained with hematoxylin (Suzhou Jin Pure Chemical Co., Ltd.). The Image-Pro Plus image analysis system (Media Cybernetics, Inc., Rockville, MD, USA) was used to analyze the average optical density (OD).
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10

Apoptosis Quantification in Hippocampal Regions

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The numbers of TUNEL-positive and caspase-3-positive cells in the selected hippocampal areas (CA1, CA2-3 and dentate gyrus) were counted hemilaterally under an Olympus-BX51 light microscope (Olympus Corporation, Tokyo, Japan) and were expressed as the number of cells per mm2 in the selected hippocampal areas. The areas of hippocampal CA1, CA2-3 and dentate gyrus were measured using the Image-Pro® Plus computer-assisted image analysis system version 4.5.1.22 (Media Cybernetics Inc., Rockville, MD, USA). In order to confirm the expression of Bcl-2, Bax, Bid, cytochrome c, Apaf-1 and caspase-9, the detected bands were calculated densitometrically using the Image-Pro Plus image analysis system (Media Cybernetics Inc.). Statistical analysis was performed using one-way analysis of variance followed by Duncan's post-hoc test, and the results were expressed as the mean ± standard error of the mean. P<0.05 was used to indicate a statistically significant difference.
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