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5 protocols using alexa fluor 594 affinipure goat anti mouse igg

1

Visualizing ER Protein Retention in Osteoblasts

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Protein retention by the ER was visualized by fluorescence microscopy using an antibody against the KDEL peptide, present in ER targeted proteins, as described previously.41, 42 Calvaria‐derived osteoblasts were cultured on collagen‐coated cover slips in 6‐well plates and fixed with 4% paraformaldehyde in PBS for 30 minutes at 4°C. Following permeabilization with solution containing 0.2% Triton X‐100, 100 µg/mL BSA, 0.01% sodium azide the cells were stained with anti‐KDEL antibody (1:200, ab12223, Abcam) in PBS containing 100 µg/mL BSA at room temperature for 1 hour. After 3 washes with 0.2% Triton X‐100, cells were incubated with Alexa Fluor®594 AffiniPure Goat Anti‐Mouse IgG (1:100, #115‐585‐003, Jackson Immunoresearch) for 1 hour and stained with DAPI. Images were captured as Z‐stacks with Zeiss LSM 880 Confocal Microscope using a 20X objective with constant parameters of acquisition (excitation wavelength: 405 and 561 nm). The z‐stacks were processed into a single 2D image using the Zen software. KDEL immunostaining was quantified using Image J software. First, a region of interest was selected by manually drawing the cell margin for each cell. Then, the average fluorescence pixel intensity of each cell in the red channel was determined.
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2

Immunofluorescence and Western Blot Antibodies

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The primary antibodies used for Immunofluorescence staining in this study were anti-CD31 (1:300, Abcam, ab222783), anti-ZO-1 (1:300, Abcam, ab221547), anti-Occludin (1:300, Abcam, ab216327), anti-NeuN (1:300, Abcam, ab104224), anti-GFAP (1:1000, Abcam, ab7260), anti-Sox17 (1:100, Santa Cruz Biotechnology, sc-130295), and anti-CD68 (1:300, Abcam, ab283654). The secondary antibodies used for immunofluorescence staining in this study were Alexa Fluor® 488 AffiniPure™Goat Anti-Rabbit IgG (H + L)(1:300, Jackson, 111-545-003) and Alexa Fluor® 594 AffiniPure™Goat Anti-Mouse IgG (H + L)(1:300, Jackson, 115-585-003). Primary antibodies used for western blot studies were anti-ZO-1 (1:1000, Abcam, ab221547), anti-Occludin (1:1000, Abcam, ab216327), anti-β-actin (1:2000, Servicebio, Wuhan, China), anti-Sox17 (1:500, Santa Cruz Biotechnology, sc-130295; 1:1000, Proteintech, Wuhan, China, 24903-1-AP), anti-CD31(1:1000, Abcam, ab222783), anti-UCHL1 (1:1000, Abcam, ab108986), anti-Flag-Tag (1:2000, Cell Signaling Technology, #14793), anti-Myc-Tag (1:2000, Cell Signaling Technology, #9402), and anti-HA-Tag (1:2000, Cell Signaling Technology, #3724). The secondary antibodies used for western blot studies were HRP conjugated Goat Anti-Rabbit IgG (H + L) (1:5000, Servicebio, GB23303) and HRP conjugated Goat Anti-Mouse IgG (H + L) (1:5000, Servicebio, GB23301).
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3

Immunofluorescence Staining of Occludin and BRD4

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Dewaxed and rehydrated slides of colon sections were boiled in citrate-EDTA antigen retrieval solution for 10 min, and were blocked with 10% normal goat serum. And then incubated with rabbit occludin primary antibody (Proteintech, 27260-1-AP, 1:200) or mouse BRD4 primary antibody (Proteintech, 67374-1-Ig, 1:100) overnight at 4°C followed by Alexa Fluor 488-Affinipure Goat Anti-Rabbit IgG (Jackson, JAC-111-545-144, 1:1,000) or Alexa Fluor 594-Affinipure Goat Anti-Mouse IgG (Jackson, JAC-111-545-144, 1:1,000). 4’,6-dia-midino-2-phenylindole (DAPI) was used for DNA counterstain.
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4

Immunocytochemical Analysis of TRPA1

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Primary antibodies used in the study were: anti-TRPA1 (1:200, Alomone, Jerusalem, Israel), anti-α-actinin (1:200, Abcam, Cambridge, UK). Secondary antibodies used were: Alexa Fluor 405 goat anti-mouse IgG (1:200, Alexa), Alexa Fluor 488 goat anti-mouse IgG (1:200, Thermo Fisher Scientific), Alexa Fluor 488 AffiniPure goat anti-rabbit IgG (1:200, Jackson ImmunoResearch, West Grove, PA, USA), Alexa Fluor 594 AffiniPure goat anti-mouse IgG (1:200, Jackson ImmunoResearch). Cell imaging was performed with Leica SP8 confocal microscope (Leica, Wetzlar, Germany) and analyzed by Fiji (NIH).
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5

Immunofluorescence Staining of Pseudoviruses

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At 48 hpi, the pseudovirus-inoculated cells were fixed with the mixture of acetone and methanol (80:20) at room temperature (RT) for 5 min, washed with PBS at RT for 10 min twice and ready for primary antibody staining. To detect the backbone of lentivirus-based pseudovirus, the cells were incubated with 1:100 monoclonal antibody (mAb) to HIV p24 (Millipore, Burlington, MA, USA) as primary antibody at 4 °C overnight, washed with PBS at RT for 10 min twice, incubated with 1:50 fluorescein isothiocyanate (FITC)-conjugated goat anti-mouse IgG (KPL) as secondary antibody at RT for 1 h in dark, washed with PBS at RT for 10 min twice, mounted in DAPI solution (10 mg/L) at RT for 5 min, and covered with cover slip for observation. To detect the GFP fused to S protein of Scotophilus bat CoV-512 pseudovirus, the mAb to GFP (Thermo Fisher in 1:200 was used as primary antibody and 1:100 Alexa Fluor® 594 AffiniPure goat anti-mouse IgG (Jackson ImmunoResearch, West Grove, PA, USA) was used as secondary antibody to distinguish the green fluorescence from GFP and red fluorescence from bound secondary antibodies.
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