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Bafilomycin a1 from streptomyces griseus

Manufactured by Merck Group
Sourced in United States

Bafilomycin A1 is a macrolide compound isolated from the bacterium Streptomyces griseus. It functions as a selective and potent inhibitor of vacuolar-type H+-ATPases (V-ATPases), which are proton pumps involved in the acidification of cellular compartments.

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5 protocols using bafilomycin a1 from streptomyces griseus

1

Macrophage Infection Dynamics

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Human monocyte derived macrophages (hMDMs) were infected with 0.06 ng/ml HIV-BaL for three or seven days before used in experiments. At the day of experiment some cells were pre-treated with 100 nM bafilomycin A1 (from Streptomyces griseus, Sigma Aldrich) 1 h at 37 °C, 5% CO2 prior infection with live Mtb or with FITC labelled Saccharomyces cerevisiae (referred to as yeast; as positive stimuli showing high level of phagosomal maturation) at MOI = 5–10. After infection, the cells were incubated for different time points, depending on experiment.
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2

Western Blot Antibody Validation and Assay Reagents

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Primary antibodies and dilutions used for Western blotting were as follows: ATG3 C-ter (1:1,000, Abcam, ab108282), ATG3 N-ter (1:1,000, Abcam, ab108251), ATG4B (1:1,000, Cell Signaling Technology, no. 5299), β-actin (1:4,000, Sigma, A1978), FLAG biotin-conjugated (1:1,000, Sigma, F9291), GFP (1:2,000, Clontech, no. 632381), LC3A/B (1:500, Cell Signaling Technology, no. 12741), LC3B (1:1,000, Sigma, L7543), SQSTM1 (1:1,000, Sigma, P0057), vinculin (1:1,000, Abcam, ab129002).
Secondary antibodies for Western blotting with chemiluminescence-based detection were as follows: goat anti-rabbit/anti-mouse IgG, HRP-linked (1:5,000, Cell Signaling Technology, no. 7074/no. 7076). For fluorescence-based detection, the following were used: IRDye 800CW goat anti-rabbit/anti-mouse (1:15,000 with 0.02% SDS, LI-COR no. 926-32211/926-32212); IRDye 680LT goat anti-rabbit/anti-mouse (1:25,000 with 0.02% SDS, LI-COR no. 926-68021/926-68020).
Torin1 was purchased from Merck-Millipore (no. 475991), and bafilomycin A1 from Streptomyces griseus was purchased from Sigma (B1793); both were dissolved in DMSO. Recombinant GST–ATG4B WT and C74S were produced and purified as described previously (65 (link)). Earle's balanced salt solution (EBSS) containing calcium and magnesium was purchased from Thermo Fisher Scientific (no. 24010-043).
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3

Autophagy Induction and Inhibition

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Cells were kept in HBSS (Sigma Aldrich, St. Louis, MO, USA), supplemented with 5 mg/mL magnesium and 6.6 mg/mL calcium for 6 h to simulate nutrient starvation and induce autophagy. Bafilomycin A1 from Streptomyces griseus (Sigma Aldrich, St. Louis, MO, USA) was used at a final concentration of 50 nM for 6 h to block the clearance of autophagosomes.
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4

Antibody-based Protein Analysis in Autophagy

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Antibodies against microtubule-associated protein light chain 3 (LC3) and α-tubulin were obtained from Sigma Chemical Co. (St Louis, MO, USA) and Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA), respectively. Anti-p21Waf1/Cip1, anti-p27Kip1, anti-cyclin D1, anti-caspase-3, poly (ADP-ribose) polymerase (PARP), anti-c-jun-N-terminal kinase (JNK), anti-phospho-JNK (Thr183/Tyr185), anti-adenosine monophosphate-activated protein kinase (AMPK), anti-phospho-AMPK (Thr172), anti-ULK, anti-phospho-ULK (Ser555), anti-c-jun, anti-phospho-c-jun (Ser73), anti-ERK1/2, anti-phospho-ERK1/2 (Thr202)/Tyr204), anti-p38, anti-phospho-p38 (Thr180/Tyr182), anti-p53, anti-phospho-p53 (Ser15), anti-Bcl-2, anti-p62/SQSTM1, and anti-Beclin-1 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Propidium iodide (PI), Ribonuclease A (RNase A) from bovine pancreas, monodansyl cadaverine (MDC), 2′7′-dichlorofulorescein diacetate (DCF-DA), Bafilomycin A1 from Streptomyces griseus, and 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma Chemical. SP600125, SB203580, PD98059, and N-acetyl-L-cysteine (NAC) were obtained from Calbiochem (San Diego, CA).
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5

Liposomal m-THPC Cellular Uptake Mechanisms

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Cells were pre-treated with inhibitors and, subsequently, with DMPC/1a or DMPC/1b liposomes loaded with m-THPC, for 1 h. The inhibition of clathrin function was achieved by pretreating LN229 cells with 28 μM chlorpromazine for 60 min at 37 °C. To investigate the caveolae-mediated uptake, cells were treated with 9 μg mL -1 of Filipin III from Streptomyces filipinensis for 60 min at 37 °C. In order to investigate the dependence of liposome uptake on the acidification of endosomes, cells were treated with 100 nM Bafilomycin A1 from Streptomyces griseus (Sigma-Aldrich) for 60 min at 37 °C. The role of the actin cytoskeleton in endocytosis was investigated by pre-treating cells with 30 μM LY294002 for 60 min at 37 °C.
At the end of each treatment, cells were washed with icecold Hank's balanced salt solution (HBSS), detached with EDTA and 0.25% trypsin, resuspended in ice-cold PBS and immediately analyzed for the photosensitizer content. filter and acquired in "log" mode. At least 10 000 events were analyzed. The m-THPC content was evaluated as fluorescence intensity, expressed as the mean fluorescence channel (MFC). The analysis was performed using CellQuest™ software (Becton Dickinson). Results analyzed were reported as mean percent of inhibition obtained from 3 independent experiments.
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