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5 protocols using tnfri

1

Measuring Immune Activation Biomarkers

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Plasma levels of immune activation and inflammation were measured in the Funderburg Lab (Ohio State University, Columbus, OH) using commercially available enzyme-linked immunosorbent assay (ELISA) kits. Plasma samples were thawed at 4 °C overnight and analyzed in batch. The concentrations of sCD14, IL-6, hsCRP, sCD163, and TNFR-I (R&D Systems; Minneapolis MN), D-dimer (Asserachrom D-DI immunoassay, Diagnostica Stago, Asnieres France), and Lp-PLA2 (PLAC test ELISA kit, Diadexus Inc.; San Francisco CA) were measured using protocols provided by the manufacturers. The inter- and intra-assay variability among these assays ranged between 3.9 and 11.2% and 3.4–9.8%, respectively.
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2

Apoptosis Signaling Pathway Profiling

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The cells or tissue biopsy samples were homogenized in a protein lysis buffer. A 50-μg protein sample was separated through 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes. After blocking, the membranes were immunoblotted with various primary antibodies, followed by incubation with the appropriate peroxidase-coupled secondary antibodies. Furthermore, the signal was visualized on an X-ray film after detecting with an enhanced chemiluminescent detection system. Antibodies to p21, p-p53 (phosphorylated at S15, S46, and S392), tumor necrosis factor receptor I (TNF RI), Fas-associated death domain protein (FADD), cellular inhibitor of apoptosis protein 1 (cIAP-1), hypoxia-inducible factor (HIF)-1α, and TNF-related apoptosis-inducing ligand receptor 1 (TRAIL R1) were purchased from R&D Systems.
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3

Isolation of Treg-specific DARPins

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DARPins have been described previously [19 (link), 21 ]. Two rounds of cell-based affinity selections were each performed on 107 activated expanded Treg cells originating from seven donors using a DARPin phage display library containing up to 109 binding members, as described previously [17 (link), 18 (link)]. The following recombinant human proteins were included as de-selection antigens: TCR α and β chains, CD5 (Cambridge Biosciences); CD69, CD3ε, and ITGB2 (Sino Biological); CD2 (Abcam); CD132, CD122, CD39, IL-10Rα, sCD4, CD109, IL-1R, IL-6Rα, IL-14Rα, IFN-γR1, CD45, CD38, TNFRI, 4-1BB, CD30, GITR, PD-1, B7-H1, CD44, CD25, CD27, and CD28 (R&DSystems). DARPins isolated from two rounds of selections were reformatted as either human IgG1 Fc domain fusions or mouse IgG2a Fc domain fusions and expressed in HEK293 cells (ATCC).
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4

Cytokine and Signaling Profiling of PBMCs

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PBMCs from healthy individuals were prepared and stained with CD14 and TNFRI or TNFRII (R&D Systems). For intracellular cytokine staining, cells were incubated for 5 h with PMA (50 ng/mL, Sigma-Aldrich) and ionomycin (0.5 μg/mL, Sigma-Aldrich) or with lipopolysaccharides (LPS, 100 ng/mL, Sigma-Aldrich) in the presence of GolgiPlug (BD Biosciences). The resulting cells were first surface-stained with anti-human CD4 antibody (BD Biosciences) or CD14 antibody (eBioscience) and then stained with antibodies to human IFNγ (BD Biosciences), IL-17, IL-6, or IL-1β (eBioscience) by using Cytofix/Cytoperm Fixation/Permeabilization Kit (BD Biosciences). For p-STAT3 staining, cells were preactivated by anti-CD3/CD28 (1 μg/mL) for 24 h, fixed with 2% paraformaldehyde for 10 min at 37°C, and permeabilized by adding 100% pre-cold methanol for 30 min on ice. The resulting cells were stained with anti-human CD4 antibody, anti-p-STAT3 antibody (BD Biosciences), or isotype control (BD Biosciences).
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Quantification of Cytokines by ELISA

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IL-6, IL-1β, IL-10, TNF-α and TNF-RI (R&D Systems Inc., Minneapolis, MN, USA) were measured by ELISA (enzyme-linked immunosorbent assay) as described previously [13 (link)]. Quantification of cytokines was done by comparison of the optical density in the ELISA reader (Power Wave, Bio-Tek, USA) using a 450 nm filter with the optical density of controls. Minimal detection values for TNF-α, IL-10 and TNF-RI were 15.6 pg/mL, IL-6 was 9.4 pg/mL and IL-1β was 7.8 pg/mL.
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