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14 protocols using gwiz gfp

1

Plasma-Induced GFP Expression Analysis

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Prior to plasma exposure, the entire volume of growth medium was aspirated. One hundred μg gWizGFP (Aldevron, Fargo, ND, USA), was carefully layered over the cells in 100 μl of phosphate buffered saline (PBS). Cells were exposed to the plasma at a 2 mm or 5 mm distance for 5 seconds (sec) for each experiment. Immediately after plasma irradiation, 5 ml of complete growth medium was layered over the cells, and the slides were placed in the incubator for an additional 24 hours.
We also investigated the influence of the electric field on plasma-induced GFP expression. The glass slide was flipped over so other processes such as exposure to reactive species could not reach the target cells. For these experiments, the distance between cell surface and plasma was maintained at 2 mm at a voltage of 11.25 kV.
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2

Recombinant Spider Silk Plex Formation

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Gel electrophoresis in agarose gels was carried out at 80 V. Agarose gel (0.8% w/v) containing ethidium bromide (0.05 μL/mL) was prepared in Tris-acetate-EDTA buffer. Polyplex solutions were prepared at different N:P ratios using 1 μg of pDNA (g-Wiz-GFP, Aldevron, Madison, WI). Before subjecting the samples to gel electrophoresis, 2 μL of 6X Blue/Orange Loading Dye (Promega, Madison, WI) were added. Recombinant spider silks-pDNA interaction is shown by a lack of migration of the pDNA in the electrophoretic field.
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3

Liposomal Delivery of Plasmid Vectors to Neural Cells

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After 24 hours of culturing bEnd.3, primary glial and primary neuronal cells (1×106 cells/well) on six-well plates, the cells were treated for 4 hours with liposomal formulations (100 nM) containing either chitosan–plasmid vector encoding green fluorescent protein (pGFP) (gWiz GFP; Aldevron, Fargo, ND, USA) or plasmid vector encoding β-galactosidase (pβgal) (gWiz βgal; Aldevron) complexes.35 (link),39 (link) Media were replaced and cells were incubated for 48 hours. The percentage of cells expressing green fluorescent protein (GFP) was analyzed using a flow cytometer (BD Accuri C6; BS Biosciences, San Jose, CA, USA) with λex 488 nm and λem 533/30 nm (optical filter FL1). GFP expression in cells was also observed using a fluorescence microscope. The induction of β-galactosidase enzyme activity was quantified using a β-galactosidase reagent assay (Promega Corporation, Madison, WI, USA). In brief, cells were lysed using βgal assay buffer and incubated with substrate for 60 minutes at 37°C. After the addition of stop solution, the absorbance was measured at 420 nm. Total cellular protein levels were determined by the BCA protein assay.
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4

Branched PEI-Mediated Gene Delivery

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Branched PEI (MW=25kDa), gold nanoparticles of 5–40 nm were obtained from Sigma-Aldrich. The concentration of 1X AuNPs refers to the stock solution, which has 0.01 wt% of Au (0.1 mg/ml) while the actual particle number varies with the size of AuNPs. Other concentrations of AuNPs were prepared by either concentrating or diluting from the stock solution. DNA plasmids with gWiz GFP and gWiz Luc reporter genes were purchased from Aldevron, Inc. (Fargo, ND). Small interfering RNA (siRNA) used for silencing GFP (expressed by pmaxGFP purchased from Lonza) and Luciferase genes were synthesized by Thermo Scientific (Pittsburgh, PA) and the sequences were as follows: siRNA for GFP silence, sense strand, 5′-CGCAUGACCAACAAGAUGAUU-3′; antisense strand, 5′-UCAUCUUGUUGGUCAUGCGGC-3′; Luciferase GL3 Duplex (Luc-siRNA), sense strand, 5′-CUUACGCUGAGUACUUCGA-3′; antisense strand, 5′-UCGAAGUACUCAGCGUAAG-3′. All other chemicals were purchased from Sigma-Aldrich and the cell culture reagents were purchased from Life Technologies (Carlsbad, CA) unless specified.
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5

Molecular Tools for Cell Analysis

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The reporter plasmids encoded luciferase (gWiz-Luc) and green fluorescent protein (gWiz-GFP) were purchased from Aldevron (Fargo, ND). CPA, a reagent for intracellular calcium depletion, was obtained from Iurii Semennov (Old Dominion University). D-Luciferin, which was utilized for luciferase assay or live cell imaging, was purchased from Goldbio Technology (St Louis, MO). WST-1 for cell viability assay was obtained from Roche Applied Science (Indianapolis, IN).
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6

Purification and Characterization of HR1 Plasmid DNA and Polyplexes

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We purified the pCMV-HR1 DNA as previously described
[42 (link)].
HR1 and GFP pDNA (gWiz-GFP, Aldevron)
were purified with an endotoxin-free plasmid DNA purification
NucleoBond® Xtra Maxi plus EF kit (Macherey-Nagel
Inc.). The arginine-grafted bioreducible poly(disulfide amine) (ABP)
polymer, generation 0 (G0), and G1 ABP-conjugated polyamidoamine (PAMAM)
dendrimer (PAM-ABP) were synthesized as previously described [41 (link),43 (link),44 (link)]. ABP was
incorporated into the poly(amido-amine) (PAMAM) dendrimer, creating a high
molecular weight bio-reducible polymer, PAM-ABP. G0 PAM-ABP was composed of
a backbone of PAMAM G0 and four ABP residues at the surface. Then, G1
PAM-ABP had eight ABP residues (Suppl. Fig. 2). The
HR1 plasmid DNA—alone and branched
poly(ethylenimine) (bPEI, 25 kDa, Sigma-Aldrich) polyplex
(HR1/PEI) were used as controls. The
HR1 polyplexes were prepared in a 20 mM
HEPES/5% glucose buffer. After incubation for 30 min at room
temperature, the particle size of the polyplex samples was evaluated by
dynamic light scattering using a Zetasizer Nano ZS (Malvern Instruments
Ltd.). Surface charge was measured by determination of Zeta potential using
the same instrument.
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7

Synthesis and Characterization of Hydrogel Biomaterials

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1,4-Butanediol diacrylate (BDA), 5-amino-1-pentanol (S5), and pentaerythritol tetraacrylate (PTTA) were purchased from Sigma-Aldrich. 1-(3-Aminopropyl)-4-methylpiperazine (E7) was purchased from Fisher Scientific. Lithium bromide (LiBr) for GPC measurements was purchased from Sigma-Aldrich. Dimethyl sulfoxide (DMSO), dimethylformamide (DMF), acetone, and diethyl ether were purchased from Fisher Scientific. Deuterated chloroform (CDCl3) and tris acetate-EDTA (TE) buffer were purchased from Sigma-Aldrich. Hank’s balanced salt solution and Alamar Blue Assay Kit were purchased from Sigma and Invitrogen. Dulbecco’s phosphate buffered saline (PBS) and PicoGreen assay kits were purchased from Life Technologies and used as per the manufacturer’s protocol. Sodium acetate (Sigma) was diluted to 0.025 M before use. Cell culture Dulbecco’s modified Eagle medium (DMEM) was purchased from Sigma. Fetal bovine serum (FBS) purchased from Gibco was filtered through 0.2 µm filters before use. The commercial green fluorescent protein plasmid (gWiz-GFP) was obtained from Aldevron, Fargo, ND, USA. JetPEI was purchased from Polyplus Transfection, Illkirch-Graffenstaden, Strasbourg, France.
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8

Plasmid Preparation and Optimization

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gWiz-GFP or gWiz-RFP reporter gene plasmids were purchased from Aldevron (Fargo, ND). NP plasmid encodes the full-length nucleoprotein derived from the A/Puerto Rico/8 (H1N1) strain of influenza. pH5HA is a SynCon vaccine construct that encodes a consensus sequence of hemagglutinin of A/Vietnam/2004 (H5HA) strain of influenza virus. Briefly, consensus sequence for pH5HA vaccine was generated by aligning multiple primary sequences (obtained from the Los Alamos National Laboratory influenza sequence database) and choosing the most common amino acid at each position to generate a sequence not necessarily found in nature (synthetic) but which retained characteristics of the component sequences chosen.51 (link) Sequences were then optimized for codon usage, RNA structure, and GC content and were synthesized. Synthetic genes were then subcloned into a pVax expression vector with a CMV promoter (Invitrogen, Carlsbad, CA). The size of the plasmid was 4.733 kb. All plasmids were diluted in 1× phosphate-buffered saline (PBS) before injection.
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9

Lipid-based Nanoparticle Formulation and Characterization

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Lipids including 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000] (DSPE-mPEG(2 kDa)), 1,2-distearoyl-sn-glycero-3-phosphoethanol-amine-N-[maleimide(polyethylene glycol)-2000] (ammonium salt) (DSPE-PEG(2 kDa)-MAL) and 1,2-dioleoyl-3-trimethy-lammonium-propane (DOTAP) were obtained from Avanti Polar Lipids and used without further purification. Heterobifunctional cross-linker 3-(2-pyridyldithio)propionyl hydrazide) (PDPH) was obtained from Pierce. Heparin, sodium nitrite, 3,5-dinitrosalicylic acid, tris(bipyridine)ruthenium(II) chloride), 5,5′-dithiobis(2-nitrobenzoic acid) (Ellman's reagent), tris(2-carboxyethyl)phosphine hydrochloride (TCEP-HCl), and Triton X-100 were obtained from Sigma-Aldrich and used without further purification. Plasmid DNA encoding for reporter proteins firefly luciferase (gWiz-Luc) and GFP (gWiz-GFP) were obtained from Aldevron.
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10

Transfection and Viral Titer Assay

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MA-104 cells (3 × 105 cells per well, 6-well plate) were transfected with 3 µg of pCMV-SHFV, pCMV-SHFV-eGFP, pCMV-SHFV-eGFPΔORF 2a/2b/3,/4/2a’/2b’/3′/4′, or pCMV-SHFV-eGFP-EAV-ORF2ab34 with 4.5 µL of lipofectamine 3000 (Thermo Fisher Scientific). At 6 h post-transfection (p.t.), transfection mixtures were removed and 3 mL of EMEM with 2% FBS was added to cells. At 48 h p.t., tissue culture supernatants (TCSs) were harvested and subjected to plaque assay for viral titer measurement as previously described [28 (link)]. For each transfected cell line, eGFP expression plasmid gWIZ-GFP (Aldevron, Fargo, North Dakota, USA) was used as a control for transfection efficiency.
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