The largest database of trusted experimental protocols

11 protocols using complete tablets easypack

1

Detailed Protein Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Experimental cells were harvested in a lysis buffer (0.5% SDS, 0.04 mol/L DTT, pH 7.5), which was supplemented with the protease inhibitor cOmplete Tablets EASYpack or phosphatase inhibitor PhosSTOP EASYpack (either one tablet per 10 mL of lysis buffer, Roche, Mannheim, Germany). The lysates were denatured immediately at 100 °C for 10 min, sonicated sufficiently, and diluted in 3× loading buffer (187.5 mmol/L Tris-HCl, pH 6.8, 6% SDS, 30% Glycerol, 150 mmol/L DTT, 0.3% Bromphenol Blue) at 100 °C for 5 min. Subsequently, equal amounts of protein extracts were subjected to separation by SDS-PAGE containing 4–15% polyacrylamide, and subsequent visualization by Western blotting with distinct antibodies as indicated. On some occasions, the blotted membranes were stripped for 30 min and then re-probed with additional primary antibodies. β-actin served as an internal control to verify equal loading of proteins in each of electrophoretic wells.
+ Open protocol
+ Expand
2

Insulin Sensitivity Evaluation in Liver Spheroids

Check if the same lab product or an alternative is used in the 5 most similar protocols
Insulin sensitivity of liver spheroids was measured by evaluating AKT phosphorylation using Western blotting. Liver spheroids were cultured for 7 days in culture medium supplemented with different insulin concentrations. Subsequently, spheroids were exposed for 10 min to high insulin levels (1.7 µm). 32–48 spheroids per sample were pooled and lysed in RIPA buffer supplemented with protease inhibitor (cOmplete Tablets EASYpack, Roche) and phosphatase inhibitor cocktail (PhosSTOP, Sigma). The membranes were blocked with 5% (w/v) bovine serum albumin (BSA) in TBS with 0.1% Tween‐20 for 1 h at room temperature and subsequently incubated overnight at 4 °C with antibodies against pAKTSer473 (4060T, Cell Signaling Technology) and vinculin (129002, Abcam) as reference. Insulin sensitivity was measured by comparing the pAKT:vinculin intensity ratios before and after insulin stimulation.
+ Open protocol
+ Expand
3

Colon Tissue Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Colons were flushed with PBS and frozen at –70 °C. Colon tissues were mechanically disrupted using the Bullet Blender® (Next Advance) at 4 °C and after lysis with RIPA buffer with Phosphatase Inhibitor Cocktail (PhosStop EASYpack, Roche) and Protease Inhibitor Cocktail (complete Tablets EASYpack, Roche). Tissues were centrifuged for 15 min at 4 °C and 16,000 g. Supernatants were collected, run on SDS gels, and transferred onto membranes. The membranes were blocked and probed with anti-Bcl-2 (Biolegend, San Diego, CA, USA) and anti-β-actin (Biolegend, San Diego, CA, USA). ImageJ was used for densitometry.
+ Open protocol
+ Expand
4

Repagermanium-Mediated Antioxidant Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Repagermanium (lot. 006316 A, purity > 99.9%), the polymer of THGP, was produced at the Hakodate plant of the Asai Germanium Research Institute Co., Ltd. (Hokkaido, Japan), and Bis(2-carboxyethylgermanium(IV) sesquioxide) was purchased from Sigma-Aldrich (Missouri, USA). Potassium bromide (KBr) and D2O were purchased from Kanto Chemical, Co., Inc (Tokyo, Japan). NHDFs and a Fibroblast Growth Medium 2 Kit were purchased from Takara Bio (Shiga, Japan). Xanthine oxidase (XOD from buttermilk) was purchased from Oriental Yeast Co., Ltd. (Tokyo, Japan). Hypoxanthine (HPX), hydrogen peroxide and 4% paraformaldehyde phosphate buffer solution were purchased from Wako Pure Chemical Industrial Co., Ltd. (Osaka, Japan). Cellstain-PI solution and Hoechst 33342 solution were purchased from Dojindo Laboratories Co., (Kumamoto, Japan). A complete tablets EASY pack was purchased from Roche Diagnostics GmbH (Mannheim, Germany). NR4A2 and β-actin antibodies were purchased from Santa Cruz Biotechnology (California, USA) and Abcam (Cambridge, England). Secondary antibodies, Goat Anti-Mouse IgG H&L (HRP) and Donkey Anti-Goat IgG H&L (HRP) were purchased from Abcam. All reagents used in this study were of special or molecular biological research grade.
+ Open protocol
+ Expand
5

Western Blot Analysis of MID1 Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates were generated from cell pellets using Magic Mix (48% urea, 15 mM Tris pH 7.5, 8.7% Glycerin, 1% SDS, 143 mM β-mercaptoethanol) containing protease and phosphatase inhibitors (cOmplete Tablets easypack, PhosSTOP easypack, Roche) and transferred to a QIAshredder column (QIAGEN). After centrifugation at 12,000g for 2 min, the solution was transferred into a fresh tube and frozen at −80°C until needed. The concentration was not measured. SDS gel electrophoresis was used to separate proteins by their size. Proteins were transferred to a PVDF membrane by using the Trans Blot Turbo Transfer Pack (Bio-Rad). Membranes were incubated for 1 h with blocking buffer (PBS, 0.1% Tween, 5% milk), followed by overnight incubation with primary antibody diluted in blocking buffer. Membranes were washed three times for 10 min with PBS-T (PBS, 0.1% Tween), incubated for 1 h with secondary antibody diluted in blocking buffer, and washed three times for 10 min with PBS-T (PBS, 0.1% Tween). Membranes were exposed using the Western Lightning Plus-ECL (Perkin Elmer), and imaging was performed by using ChemiDoc Imaging System (Bio-Rad). Images were prepared and analyzed using the Image Lab software (Bio-Rad). Mouse monoclonal anti-β-ACTIN (A2066-200UL; 1:2,000; Sigma-Aldrich), rabbit polyclonal anti-MID1 C-terminal (NBP1-26612; 1:500; Novus).
+ Open protocol
+ Expand
6

Tissue Homogenization and RNA/Protein Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues were homogenized in Qiazol (Qiagen, Hilden, Germany, 79306) using Magnalyser beads (PeqLab, Radnor, United States, 412-0201) at 6.500 rpm for 20 s and two runs with the TissueLyser (Qiagen, Hilden, Germany). Samples were cooled with short taps in N2 between the runs and incubated for 5 min at room temperature. RNA was isolated with PeqGOLD total RNA kit (Peqlab, Radnor, United States, 12-6634) according to the manuals. Sample purification and concentration was quantified with NanoDrop® ND-1000 (Peqlab, Radnor, United States). For western blotting experiments, tissues were homogenized with Magnalyser beads in radioimmunoprecipitation assay (RIPA) buffer (50 mM Tris-HCl, 150 mM NaCl, 2 mM EDTA, 50 mM NaF, 0.1% SDS, 0.5% Na-deoxycholate, 1% NP-40, adjusted to pH 7.2 — 7.4) supplemented with PIC (complete Tablets EASYpack, Roche, Basel, Switzeland, 04693116001) and PhosStop (Roche, Basel, Switzeland, 04906837001), incubated on ice for 20 min, and centrifuged at 15.000 x g for 15 min. The protein concentration of cleared supernatants was analyzed with a bicinchoninic acid assay kit (BCA, Thermo Fisher Scientific, Waltham, MAs, United States).
+ Open protocol
+ Expand
7

Protein Lysis with Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lysis buffers were supplemented with 1 × protease inhibitor cocktail (PIC) (cOmplete Tablets EASYpack, Roche, 04693116001) and 1 × PhosSTOP (Roche, 04906837001). Total protein lysates were obtained after washing the cells with PBS, and application of the respective buffers provided in each protocol segment.
+ Open protocol
+ Expand
8

Standardized Saliva Collection Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Subjects were requested not to eat or drink for at least 30 min before collection. All patients rinsed their mouths with 10 mL of water for 30 s. After 10 min, whole unstimulated saliva collection began. Between 8:00 a.m. and 11:00 a.m., each participant expectorated continuously in a 50 mL sterile propylene tube for a period of 5 min. Additionally, we collected the salivary pellicle deposited on lesions and the contralateral anatomical equivalent of the unaffected oral mucosa using cotton swabs. Immediately after collection, samples were deposited on ice and a protease inhibitor cocktail (cOmplete Tablets EASYpack, Roche)26 (link). We then centrifuged the samples at 14,000×g at 4 °C for 20 min to eliminate undissolved components and cellular detritus27 (link). The total protein concentration in the supernatants was determined using the BCA Protein Assay (Thermo Scientific). The samples were stored at − 80 °C for further processing.
+ Open protocol
+ Expand
9

Quantification of Hydrogen Peroxide in Mouse Kidney

Check if the same lab product or an alternative is used in the 5 most similar protocols
The quantification of H2O2 was based on a ferrous oxidation/xylenol orange assay using the Pierce Quantitative Peroxide assay according to the manufacturer’s instructions (Thermo Fisher Scientific). Briefly, 50 mg of the mouse kidney tissue was weighed and homogenized in homogenization buffer with 500 nM Tris-HCl (pH 7.0), 1% protein inhibitor cocktail (cOmplete Tablets EASYpack, Roche, Mannheim, Germany), and 1% NP-40 (KO: 6; WT: 6). After centrifugation at 9500× g and 4 °C for 15 min, an aliquot of the supernatant was transferred to a tube and protein was measured according to Lowry et al. [69 (link)], using bovine serum albumin as the standard. After the sample protein concentration was adjusted to 264 mg/mL, the hydrogen peroxide concentration was determined. Test tubes containing 100 μL of the sample solution and 1 mL of the working reagent solution were maintained at 30 °C for 30 min and then immediately measured at a wavelength of 560 nm using a spectrometer. Absorbance values were calibrated to a standard curve generated using a known concentration of H2O2.
+ Open protocol
+ Expand
10

Cellular Apoptosis Pathway Inhibition

Check if the same lab product or an alternative is used in the 5 most similar protocols
DOC was obtained from Aventis Pharmaceuticals Inc. (Bridgewater, NJ). VCR and N-acetylcysteine (NAC, A-7250) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Z-VAD-FMK was purchased from Bachem (Torrance, CA, USA). U0126 and SB203580 were purchased from Cell Signaling (Danvers, MA, USA). Curcumin was obtained from Cayman Chemical (Ann Arbor, MI, USA). PhosSTOP and cOmplete Tablets EASYpack were purchased from Roche (Basel, Switzerland).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!