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42 protocols using glutaraldehyde

1

Hepatocyte Culture on Extracellular Matrix Films

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L-ECM films were prepared as described in a previous report [14] (link). Briefly, 0.03 mg/mL solution of L-ECM was prepared using sterile water, and 200 mL/well was added to a 48-well cell culture plate (bottom area: 1.1 cm2, product no. CN-150687, Thermo Fisher Scientific, Kanagawa, Japan). The solution was air-dried on a clean bench for approximately 2 days, after which, the film was cross-linked with 1% glutaraldehyde (Wako) for 3 h for stabilization. Residual glutaraldehyde was removed by washing with CMF-PBS. Finally, the film was washed with basal medium (DMEM) to inactivate any residual glutaraldehyde. Films of collagen (Cellmatrix Type I-C: 3 mg/mL; Nitta Gelatin, Osaka, Japan) were also prepared using the same method.
Freshly isolated hepatocytes were inoculated onto L-ECM films under standard conditions (37 °C, 5% CO2, 95% air) at a seeding density of 2.5 × 104 cells/mL. Two hundred microliters of D-HDM was added to each well of a 48-well cell culture plate. The culture medium was changed after 1, 3, 5, and 7 days. During the 7-day culture, morphology of the hepatocytes was studied using a cell culture microscope (Olympus CKX53, Nagano, Japan).
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2

Single-Molecule Dynein Stepping Analysis

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To detect the stepping motion of dimeric dynein (GST-D384), we conducted a single-molecule assay by using a single trap. Cover glasses were washed with a plasma cleaner (PDC-32G, Harrick Plasma), treated with amino-silane (KBE-603; Shin-Etsu Silicone) and glutaraldehyde (Wako)61 (link), and fixed with polarity-marked microtubules with casein blocking. A dynein-coated bead was then trapped with a trap stiffness of 16 fN/nm and was brought into contact with microtubules in the presence of 1 mM ATP. We analyzed the stepping events by a step-finding algorithm using the MATLAB program62 (link). Histograms of the step size and those of the dwell time (Fig. 5B and C) were included only before dynein generated the peak force.
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3

Sperm-Oocyte Fusion Assay Protocol

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The fusion assay was performed as described previously (9 (link)). Specifically, cauda epididymal spermatozoa were incubated in TYH drops for 2 h to 3 h before the fusion assay. Unfertilized oocytes were collected from hormone-treated females 14 h after hCG injection. To remove the ZP, oocytes were treated with 1 mg/mL collagenase (C1639; Sigma Aldrich) for 10 min. After washing in TYH, oocytes were stained with Hoechst 33342 (1:10,000) for 10 min and washed repeatedly in clean TYH drops. For insemination, 1 × 105 spermatozoa per mL were used. After 30 min of incubation, oocytes were fixed with 0.25% glutaraldehyde (Wako) or 0.2% paraformaldehyde (PFA).
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4

Microfabricated 3D Gelatin Structures

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A 6-mm (width) × 6-mm (depth) × 4-mm (height) cube of 1.8% (w/v) gelatin gel was prepared for microfabrication. A portion of gelatin gel was solated by the spot heating of the microneedle tip with the absorption of the focused 1064-nm infrared laser. The motorized XY stage was moved at about 11 μm/s during the microfabrication process.With the control of the position of the end of the microneedle and the intensity of the infrared laser, flexible 3D confinement was fabricated inside the gelatin gel. After constructing the structures, crosslinking was performed by immersing the gelatin gel inside 10% glutaraldehyde (FUJIFILM Wako Pure Chemical, Osaka, Japan) for 30 min and then washed with ample purified water. Finally, the crosslinked gelatin cube was immersed in DMEM, and MS-1 cells were seeded onto the gelatin cube for observation inside the microtunnel.
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5

Transwell Assay for Cell Migration

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The cell migration analysis was carried out using transwell inserts (8.0 mm pore size; Costar, Cambridge, MA, USA). First, EGFR-fibroblast or empty vector-fibroblast cell suspensions were placed into the lower reservoir at the same density as normal media, and changed with serum-free media 24 hours later. The ovarian cancer cells were seeded at a density of 50,000 per well and then in 200 μL of serum-free medium for the stimulation. After incubation for 24 hours, noninvading cells on the top of each transwell were scraped off with a cotton swab. Cells that had migrated to the other side were fixed with 2.5% glutaraldehyde (Wako, Tokyo, Japan) and stained with crystal violet (Wako). The number of migrated cells was manually counted with a light microscope (KX4; Olympus, Tokyo, Japan). The sum of the numbers of cells in five areas was used as the migrated cell number, and expressed as a percentage of the control value. These experiments were repeated at least three times, and significant differences among treatments were assessed by analysis of variance followed by Tukey’s test.
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6

Intestinal Permeability Evaluation Techniques

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The reagents used in this study were as follows: pentobarbital (Nacalai Tesque, Kyoto, Japan) for euthanasia, Evans blue (Kanto Chemical Co., Inc., Tokyo, Japan) for the Evans blue transit test, D-mannitol (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan), phlorizin (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan) for the Ussing chamber experiment, glutaraldehyde (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan), and tannic acid (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan) for scanning electron microscopy, N-methyl-D-glucamine (Sigma-Aldrich, St. Louis, MO) for the Ussing chamber experiment, osmium tetroxide (Sigma-Aldrich, St. Louis, MO) for scanning electron microscopy, and ouabain (R&D Systems, Minneapolis, MN) for the Ussing chamber experiment.
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7

Cellular Morphology Analysis on TiO2 Nanopatterns

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SEM images (SU8230) were used to investigate cellular morphology by following the method described previously [48 (link)]. After being grown on TiO2 nanopatterns for 24 h, the cells were washed three times with PBS, fixed with 2.5% glutaraldehyde (Wako, Osaka, Japan) at 4 °C for 2 h, followed by post-fixation in 1% osmium tetroxide in PBS for at least 24 h, and then dehydrated in gradient concentrations of ethanol (50% to 100%) for 10 min. Finally, cells were dried with hexamethyldisilazane and air-dried before observation by SEM.
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8

Cell Migration Assay Using Transwell Inserts

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The cell migration analysis was carried out using transwell inserts (8.0 mm pore size, Costar, Cambridge, MA, USA). The cells were seeded at a density of 50,000 per well and then in 200 μL of serum-free medium for the stimulation. The medium containing DMEM supplemented with 0.1% fetal bovine serum was placed in the lower chamber in the presence of epidermal growth factor (EGF) (20 ng/mL, R&D Systems, Minneapolis, MN, USA). After incubation for 6 h, noninvading cells on the top of each Transwell were scraped off with a cotton swab. Cells that had migrated to the other side were fixed with 2.5% glutaraldehyde (Wako, Tokyo, Japan) and stained with crystal violet (Wako). The number of migrated cells was manually counted with a light microscope (KX4, Olympus, Tokyo, Japan). The sum of the numbers of cells in five areas was used as the migrated cell number, and expressed as a percentage of the control value. These experiments were repeated at least three times, and significant differences among treatments were assessed by ANOVA followed by Tukey’s test.
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9

Ultrastructural Analysis of Axonal Swelling

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Enucleated eyes were immersed in 0.1 M PBS containing 4% PFA (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan) and 0.5% glutaraldehyde (Fujifilm Wako Pure Chemical Corporation) for 12 hours at 4°C. ON sections were cut on a vibratome (Leica), and the resulting specimens were stained with 0.4% OsO4, uranyl acetate, and lead aspartate, followed by embedding in epon resin (Electronic Microscopy Sciences, Hatfield, PA, USA). SBF-SEM images were obtained with a Sigma VP scanning electron microscope (Carl Zeiss, Oberkochen, Germany). Axonal swelling was defined as axonal segments with a diameter greater than twice that of adjacent segments, with prominent accumulation of membranous organelles and a lack of continuous cytoskeletal bundle profiles.
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10

Cell Morphology Examination by SEM

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To observe cell morphology on the sample surface after initial 6 h incubation, the cells were washed three times with PBS and fixed in 2% glutaraldehyde (Wako, Tokyo, Japan) at 4 °C for 2 h. After dehydration in the graded ethanol series and drying using critical point dryer device (LADD 28000; Williston, VT, USA), the cell sample was coated with a gold layer and observed by SEM.
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