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8 protocols using hrp conjugated goat anti rabbit or goat anti mouse igg

1

Western Blot Analyses: Detailed Antibody Protocols

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Western blot analyses followed our standard protocols (11 (link), 44 (link), 45 (link), 46 (link)). The primary antibodies that were used are: α-RAD51AP1 (NB100-1129; Novus; 1:5000; and our own α-RAD51AP1 antibody, as previously described in (9 (link))), α-RAD54 (F-11; sc-374598; Santa Cruz Biotechnology; 1:500); α-RAD51 (Ab-1; EMD Millipore; 1:4000), α-ß-Actin (ab6276; Abcam; 1:3000), α-H3 (ab1791; Abcam; 1:10,000), α-H2A (GTX1129418; GeneTex; 1:1000); α-FLAG (F3165; Sigma; 1:1000); α-MBP (PAI-989; ThermoScientific; 1:5000). HRP-conjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch Laboratories; 1:10,000) were used as secondary antibodies and SuperSignal Substrate kit (Thermo Scientific) for the detection of signal.
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2

Mitomycin C Cytotoxicity and DNA Repair Assays

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Acute exposure of cells to MMC (Sigma) occurred in regular growth medium at 37°C for 2 h and at the concentrations, as indicated. The medium was removed, and monolayers were washed twice in warm PBS before cells were incubated in regular growth medium at 37°C until fixation. For chronic exposure to MMC, cells were plated in regular growth medium containing MMC and kept at 37°C for 12 d, at which time the cells were fixed and stained with crystal violet to visualize colonies. Exposure to γ-rays and Western blot analyses followed our standard protocols (Parplys et al., 2014 (link); Parplys et al., 2015 (link); Wiese et al., 2006 (link); Zhao et al., 2015 (link)). The primary antibodies that were used are α-RAD51AP1 (NB100-1129; Novus; 1:5,000; and our own α-RAD51AP1 antibody, as previously described in Dray et al., 2010 (link)), α-RAD54 (F-11; sc-374598; Santa Cruz Biotechnology; 1:500); α-NUCKS1 (Østvold et al., 2001 (link)), α-RAD51 (Ab-1; EMD Millipore; 1:4,000), α-PARP1 (ab6079; Abcam; 1:5,000), α-H3 (ab1791; Abcam; 1:10,000), α-XRCC4 (AHP387; AbDSerotec; 1:1,000), and α-FLAG (F3165; Sigma; 1:1,000). HRP-conjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch Laboratories; 1:10,000) were used as secondary antibodies. Western blot signals were quantified using Image Lab software version 5.2.1 (BioRad).
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3

Standardized Western Blot Analysis

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Western blot analysis was carried out according to our standard procedures [14 (link)]. The following primary antibodies were used: monoclonal mouse anti-FLAG (Sigma, M2; 1:3000), monoclonal mouse anti-α-Tubulin (Calbiochem, CP06; 1:3000), polyclonal rabbit anti-QM (Santa Cruz Biotechnology, C-17; 1:3000) and monoclonal rabbit anti-phosphoSer345-CHK1 (Cell Signaling, 133D3; 1:750). Our own polyclonal rabbit anti-human RAD51AP1 antibody was used, that has been described previously [15 (link)]. HRP-conjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch Laboratories, West Grove, PA; 1:10,000), IRDYE680-conjugated anti-mouse IgG or IRDYE800-conjugated anti-rabbit IgG (LiCor; 1:7500) were used as secondary antibodies.
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4

Clonogenic Survival and Western Blot Analysis

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Clonogenic cell survival assays after mitomycin C (MMC; Sigma) were performed, as described (Maranon et al., 2020 (link)). To assess cellular sensitivity to olaparib (AZD2281; Selleck Chemicals), cells were chronically exposed to 0.5–4 μM olaparib in regular growth medium for 12–14 days, as described (Spies et al., 2016 (link)). Cells were fixed and stained with crystal violet to determine the fraction of cells surviving.
Western blot analyses were performed according to our standard protocols (Wiese et al., 2006 (link)). The following primary antibodies were used: α-RAD51AP1 (Dray et al., 2010 (link); 1:6,000), α-RAD54L (F-11; sc-374598; Santa Cruz Biotechnology; 1:1,000); α-RAD51 (Ab-1; EMD Millipore; 1:3,000), α-PARP1 (ab6079; Abcam; 1:2,000), α-β-Actin (ab8226; Abcam; 1:1,000), α-Tubulin (DM1A; Santa Cruz Biotechnology; 1:3,000), α-HA.11 (MMS-101R; BioLegend; 1:1,000), α-Histone H3 (ab1791; Abcam; 1:10,000) and α-RAD54B (Wesoly et al., 2006 (link); 1:1,000). HRP-conjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch; 1:10,000) were used as secondaries. Western blot signals were acquired using a Chemidoc XRS+ gel imaging system and ImageLab software version 5.2.1 (BioRad).
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5

Antibody Panel for Golgi Protein Analysis

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We used the following primary antibodies: mouse monoclonal antibody against mAID (clone 1E4, catalog #M214-3; MBL), FLAG-tag (M2, catalog #F3165; Sigma), GAPDH (GA1R, catalog #MA5-15738; Invitrogen), Golgin-45 (E-3, catalog #sc-515193; Santa Cruz Biotechnology), Golgin-97 (CDF4, catalog #A-21270; Invitrogen), GM130 (35/GM130, catalog #610822; BD Transduction Labs), GRASP55 (1C9A3, catalog #66627–1-lg; Proteintech), GRASP65 (D-12, catalog #sc-374423; Santa Cruz Biotechnology), p115 (4H1; Waters et al., 1992 (link)), and α-tubulin (DM1A, catalog #14–4502-80; eBioscience) and rabbit polyclonal antibodies against Golgin-84 (Beard et al., 2005 (link)), GM130 (Wei et al., 2015 (link)), GRASP55 (catalog #PTG10598-1-AP; Proteintech), GRASP65 (UT465; Wei et al., 2015 (link)), Myc-tag (A-14, catalog #sc-789; Santa Cruz Biotechnology), and p115 (catalog #130509–1-AP; Proteintech). Secondary antibodies were as follows: Alexa Fluor 488–, Alexa Fluor 555–, Alexa Fluor 594–, or Alexa Fluor 647–conjugated highly cross-absorbed goat anti-mouse IgG (H+L) or goat anti-rabbit IgG (H+L; Invitrogen), HRP-conjugated goat anti-rabbit, or goat anti-mouse IgG (Jackson ImmunoResearch).
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6

Immunoblotting with Organelle Marker Antibodies

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We used the following primary antibodies: mouse monoclonal antibody against mAID (clone 1E4, MBL, cat.# M214-3), GAPDH (GA1R, Invitrogen, cat.# MA5-15738), Golgin-45 (E-3, Santa Cruz Biotechnology, cat.# sc-515193), Golgin-97 (CDF4, Invitrogen, cat.# A-21270), GM130 (35/GM130, BD Transduction Labs, cat.# 610822), GRASP55 (1C9A3, Proteintech, cat.# 66627-1-lg), GRASP65 (D-12, Santa Cruz Biotechnology, cat.# sc-374423), p115 (4H1) (Waters et al., 1992) ; rabbit polyclonal antibodies against Golgin-84 (Beard et al., 2005) , GM130 (Wei et al., 2015) , GRASP55 (Proteintech, cat.# PTG10598-1-AP), GRASP65 (UT465, (Wei et al., 2015) ), Myc (A-14, Santa Cruz Biotechnology, cat.# sc-789) and p115 (Proteintech, cat.# 130509-1-AP).
Secondary antibodies were as follows: Alexa Fluor 488-, Alexa Fluor 555-, Alexa Fluor 594-or Alexa Fluor 647-conjugated highly cross-absorbed goat anti-mouse IgG (H+L) or goat anti-rabbit IgG (H+L) (Invitrogen), HRP-conjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch).
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7

Western Blot Analysis Protocols

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Western blot analyses followed our standard protocols (11, (44) (45) (46) . The primary antibodies that were used are: a-RAD51AP1 (NB100-1129; Novus; 1:5,000; and our own a-RAD51AP1 antibody, as previously described in ( 9)), a-RAD54 (F-11; sc-374598; Santa Cruz Biotechnology; 1:500); a-RAD51 (Ab-1; EMD Millipore; 1:4,000), a-ß-Actin (ab6276; Abcam; 1:3,000), a-H3 (ab1791; Abcam; 1:10,000), a-H2A (GTX1129418; GeneTex; 1:1,000); a-FLAG (F3165; Sigma; 1:1,000); a-MBP (PAI-989; ThermoScientific; 1:5,000). HRPconjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch Laboratories; 1:10,000) were used as secondary antibodies and SuperSignal Substrate kit (ThermoScientific) for the detection of signal.
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8

Clonogenic Assay and Western Blot Analysis

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Clonogenic cell survival assays after mitomycin C (MMC; Sigma) were performed as described (Maranon et al. 2020) . To assess cellular sensitivity to olaparib (AZD2281; KU-0059436; Selleck Chemicals), cells were chronically exposed to 0.5-2.5 μM olaparib in regular growth medium for 12 days, as described (Spies et al. 2016) . Cells were fixed and stained with crystal violet to determine the fraction of cells surviving.
Western blot analyses were performed according to our standard protocols (Wiese et al. 2006 ). The following primary antibodies were used: a-RAD51AP1 ( (Dray et al. 2010 ); 1:6,000), a-RAD54 (F-11; sc-374598; Santa Cruz Biotechnology; 1:1,000); a-RAD51 (Ab-1; EMD Millipore; 1:3,000), a-PARP1 (ab6079; Abcam; 1:2,000), α-β-Actin (ab8226;Abcam; 1:1,000), a-HA.11 (MMS-101R; BioLegend; 1:1,000) and α-RAD54B ( (Wesoly et al. 2006 ); 1:1,000). HRP-conjugated goat anti-rabbit or goat anti-mouse IgG (Jackson ImmunoResearch; 1:10,000) were used as secondaries. Western blot signals were acquired using a Chemidoc XRS+ gel imaging system and Image Lab software version 5.2.1 (BioRad).
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