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Triple tof 5600 ms ms system

Manufactured by AB Sciex
Sourced in Canada

The Triple TOF 5600+ MS/MS system is a high-resolution, high-sensitivity tandem mass spectrometry (MS/MS) instrument. It combines a triple quadrupole-like front end with a time-of-flight (TOF) analyzer, enabling accurate mass and high-resolution measurements. The system is designed for applications requiring both high sensitivity and high resolution.

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6 protocols using triple tof 5600 ms ms system

1

Comprehensive Spectroscopic Analysis of Compounds

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All reagents were purchased commercially. 1H-NMR and 13C-NMR spectra were recorded on Bruker AC400 and Bruker AC600 NMR spectrometers, respectively (Billerica, MA, USA). Low-resolution mass spectra were recorded on a 6120 Quadrupole mass spectrometer (Agilent, Santa Clara, CA, USA) equipped with electrospray ionization (ESI). High-resolution mass spectra were determined on triple TOF 5600+ MS/MS system (AB Sciex, Concord, ON, Canada) in negative ESI mode. The purity of target compounds was determined by high-performance liquid chromatography (Agilent, Santa Clara, CA, USA, DIKMA Diamonsil Plus C18, 250 × 4.6 mm, 5 μm, 25 °C, UV 290 nM). All the biologically tested compounds achieved ≥95% purity.
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2

UHPLC-MS/MS Analysis of Compounds

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Chromatographic analysis was carried out on a Prominence™ UHPLC system (Shimadzu, Japan) coupled with a triple TOF™ 5600+ MS/MS system (AB Sciex, Framingham, MA, USA). Separations were accomplished on a Welch C18 column (2.1 mm × 100 mm, 1.8 μm, Shanghai, China) and 2 μL injected into UHPLC. The column oven was maintained at 40 °C. A linear gradient elution of eluents A (water containing 0.1% formic acid) and B (acetonitrile) was used for separation. The elution program was: 0.1–2 min, 1–5% B; 2.01–20 min, 8–37% B; 20–22 min, 37–50% B; 22–32 min, 50–90% B; 32.01–35 min, 95–95% B, 35.01–40 min, 1% B. The flow rate was 0.25 mL/min.
The mass spectrometer was operated both in negative and positive ion modes. The following parameter settings were used: ion spray voltage 4500 V; turbo spray temperature 600 °C; curtain gas 25 psi, nebulizer gas (GS 1) 50 psi, heater gas (GS 2) 50 psi, declustering potential 100 V. TOF MS and TOF MS/MS were scanned with the mass range of m/z 50–1250 and 50–1250, respectively. In the IDA-MS/MS experiment, collision energy was set at 35 eV and collision energy spread was (±) 10 eV. Accurate mass and composition for the precursor and fragment ions were analyzed using Peakview software (Version 1.2, AB Sciex) integrated with the instrument.
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3

Comprehensive metabolomic and lipidomic analysis

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High-resolution magic-angle-spinning NMR (Bruker BioSpin, Germany) and solution NMR (Bruker BioSpin) were used for 1H NMR-based metabolomic analysis of heart and serum samples, respectively. An Agilent 1290 Infinity LC and 6490 Triple Quadrupole MS system (Agilent Technologies, USA) was used to determine the concentration of SAAs. LC-ESI-MS/MS analysis for lipidomics was performed on a triple TOF™ 5600 MS/MS System (AB Sciex, Canada) combined with a UPLC system (Waters, USA). For further details, see Supplementary Information.
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4

Fecal Metabolomics by UPLC-Q-TOF-MS/MS

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Ultra-performance liquid chromatography coupled to triple quadrupole time-of-flight mass spectrometry (UPLC-Q-TOF-MS/MS) was used to analyze fecal metabolites as described in our previous study (Zhang et al., 2019b (link)). Briefly, chromatographic separation was performed on Waters AcquityTM UPLC system, mass spectrometry detection was triple TOF 5600 + MS/MS system (AB Sciex, Concord, ON, Canada). Mass data were collected in both positive and negative MSE continuum mode. Quality control (QC) samples were injected at regular intervals (every 10 samples). All raw data were imported into the Progenesis QI 2.3 (Nonlinear Dynamics, Waters, United States) and SIMCA-P + 14.0 software package for further data analysis. A more detailed analysis procedures is available in the Supplementary Material and Methods.
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5

Purification and Characterization of Organic Compounds

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All reagents and solvents were purchased commercially and used without further purification. Reaction processes were monitored by thin‐layer chromatography (TLC) and visualized under UV light at 254 and 365 nm, or color reagents. Column chromatography was conducted on silica gel (300–400 mesh) using automatic purification apparatus. 1H NMR and 13C NMR spectra were recorded on Bruker AC400 and Bruker AC600NMR spectrometer respectively in Chloroform‐d or DMSO‐d6 with tetramethylsilane (TMS) as an internal reference. High‐resolution mass spectra were recorded on triple TOF 5600+ MS/MS system (AB Sciex, Concord, Ontario, Canada) in negative or positive ESI mode. The purity of target compounds was determined by high‐performance liquid chromatography with Promosil C18 column from Agela Technologies (4.6 mm × 150 mm, 5 µm particle size). Mobile phase A was double distilled water containing 0.1% trifluoroacetic acid and mobile phase B was methanol containing 0.1% trifluoroacetic acid. Flow rate was 1 mL min−1 using linear gradients as follows: 0–1 min was 40%B, 1–5 min was from 40%B to 95%B, 5–7 min was 95%B, 7–8 min was from 95%B to 40%B, 8–10 min was 40%B. All the biologically tested compounds confirmed at least 95% purity.
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6

UHPLC-Q-TOF-MS/MS Analysis of Compounds

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UHPLC-Q-TOF-MS/MS analysis was performed on a triple TOF 5600 MS/MS system (AB SCIEX, CA, USA) coupled with a Shimadzu UHPLC system (Kyoto, Japan). According to the final chromatographic separation conditions, the following parameters were optimal: the mobile phase was 0.1 % formic acid/water (A) and acetonitrile (B); the chromatographic column was ACQUITY BEH C18 columns (2.1 × 100 mm, 1.7 μm; Waters, USA); the injection volume was 10 μL; the flow rate was 0.2 mL/min, and the temperature column was 30 °C. Gradient elution programs were optimized as follows: 0–8 min, 5–20 % B; 8–22 min, 20–45 % B; 22–28 min, 45–100 % B; 28–32 min, 100–100 % B; 32–33 min, 100–5% B; 33–37 min, 5–5% B.
The detection system used was a Triple TOF 5600 with Dual-Spray ion sources. Parameter settings were as follows: turbo spray temperature: 550 °C; ion spray voltage: 5.5 kV in the positive ion mode and −4.5 kV in negative ion mode; nebulizer gas (gas 1): 50 psi; heater gas (gas 2): 50 psi; curtain gas: 25psi; collision energy (CE): 35 eV; collision energy spread (CES): 15 eV and declustering potential (DP): 60V. In the full scan, the mass range was m/z 50–1500 Da, and the accumulation time was 200 ms. Both positive and negative ion modes were used in the instrument.
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