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7 protocols using ab237726

1

Multiplexed Immunofluorescence for Tumor Immune Profiling

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Opal 7-colour kit (NEL811001KT, PerkinElmer) was used for mIF. TMAs were dewaxed and rehydrated. In the first step, the antigen was retrieved at 125 ℃ for 3 min and then cooled to room temperature (RT). Washed with TBST three times for 5 min, incubated in H2O2 for 10 min. Repeated washed and blocked with blocking buffer. The primary antibody, PDL-1 (ab237726, Abcam, 1:500, dye 480) was incubated at RT for 30 min. Slides were washed and an HRP-conjugated secondary antibody was incubated at RT for 10 min. TSA dye (1:100) was applied for 10 min after washes. The procedures were repeated six times using the following antibodies, CD3 (ab16669, Abcam, 1:200, dye 690; used as T lymphocyte cell marker [30 (link)]), CD8 (ab93278, Abcam, 1:100, dye 570; used as cytotoxic T cell marker [31 (link)]), CD56 (ab75813, Abcam, 1:500, dye 620; used as NK cell marker [32 (link)]), CD68 (ab213363, 1:1000, Abcam, dye 780; used as pan-macrophage marker [33 (link)]), programmed death-1 (PD-1) (ab237728, Abcam, 1:300, dye 520), programmed death ligand-1 (PD-L1) (ab237726, 1:500, dye 480) [34 (link)]. Secondary antibodies anti-mouse (NEF822001EA, PerkinElmer) or anti-rabbit (NEF812001EA, PerkinElmer) were used at a 1:1000 dilution.
With further analysis by the HALO system, we quantified the number of six immune targets and the spatial position relationship between them [35 ].
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2

Immunohistochemical Analysis of Glioma Samples

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Eight glioma samples were fixed by immersion in 10% formalin solution and then embedded in paraffin. 10-µm thick tissue sections were deparaffinized and rehydrated (xylene × 2 for 10 minutes each, 100%, 95%, and 75% ethanol for 5 minutes each and deionized water for 5 minutes). The sections were incubated with 3% hydrogen peroxide in methanol for 10 minutes to quench peroxidase activity. Antigen retrieval was performed by boiling sections in 10 mM sodium citrate buffer (pH 6.0) for 10 minutes. After being rinsed with PBS, sections were blocked with normal goat serum for 20 minutes. The samples were incubated with primary anti-PD-L1 (1:200, ab237726, Abcam, Cambridge, UK) or anti-TGFβ antibody (1:200, BA0290, BOSTER, Wuhan, China) overnight at 4°C. The sections were then incubated with secondary antibody () for 30 minutes at room temperature. The staining was developed using 3,3’-diaminobenzidine (DAB) as substrate and counterstained with hematoxylin. The sections were developed using 3,3’-diaminobenzidine (DAB) as substrate and counter-stained with Mayer’s Hematoxylin. All sections were independently reviewed by two pathologists according to the WHO criteria.
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3

Immunohistochemical Analysis of PD-L1, B7-H3, and B7-H4 in PaCa

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Immunohistochemistry (IHC) staining was performed on these TMAs of PaCa tissues according to the standardized procedure. EDTA was used for antigen retrieval, and the primary antibodies were incubated overnight at 4 °C. The primary antibodies used in the research were as follows: anti-PD-L1 (1:100 dilution, Cat. ab237726, clone: CAL10, Abcam, Cambridge, UK), anti-B7-H3 (1:8000 dilution, Cat. ab219648, clone: EPR20115, Abcam, Cambridge, UK), anti-B7-H4 (1:50 dilution, Cat. ab252438, clone: EPR23665–20, Abcam, Cambridge, UK) and anti-CD8 (Ready-to-use, Cat. PA067, clone: 457F6F8, Abcarta, Suzhou, China). Notably, staining data for PD-L1 and CD8 of the HPanA120Su02 TMA was provided by Outdo BioTech (Shanghai, China). A total of 9 samples that fall off the HPanA120Su02 TMA during the IHC staining for B7-H4. Thus, 57 samples in the HPanA120Su02 TMA were used for further analysis. Antibody staining was visualized using diaminobenzidine and hematoxylin counterstain, and stained TMAs were scanned using Aperio Digital Pathology Slide Scanners.
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4

Immunohistochemical Expression of CD8 and PD-L1

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Immunohistochemical expression of TIMTs markers (CD8 and PD-L1) was investigated in all patients. Each tumor sample was fixed in formalin and embedded in paraffin. The blocks were sliced into 5 μm-thick sections, which were deparaffinized in Histo-Clear (Cosmo Bio), hydrated in a graded series of alcohols, and subjected to heat-activated antigen retrieval. After blocking endogenous peroxidase activity, the tissue was incubated with CD8 (rabbit monoclonal antibody; ab237709; Abcam; ready to use) and PD-L1 (rabbit monoclonal antibody; ab237726; Abcam) antibodies for 4 hours at room temperature. Subsequently, the sections were washed and incubated with biotinylated secondary antibody for 30 minutes at room temperature. The reaction complexes were visualized with diaminobenzidine and counterstained with hematoxylin.
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5

FMNL3 Knockdown Protein Analysis

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At 48 hours after transfection, negative control and FMNL3 konckdown cells were lysed to extract total protein. Western blot analysis were then performed according to the standard protocols. The primary antibodies for anti-FMNL3 (1:1000 dilution, Cat. ab224185, Abcam, Cambridge, UK), anti-PD-L1 ((1:1000 dilution, Cat.ab237726, Abcam, Cambridge, UK), and Tubulin (1:2000 dilution, Cat. 11224-1-AP, ProteinTech, Rosemont, USA) were applied.
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6

Multiplexed Quantitative Immunofluorescence for CeCa

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To measure the levels of PD-L1, B7-H4 and CD8 in the CeCa samples, the multiplexed QIF was directly performed on the tissue section using a previously described protocol with simultaneous detection of DAPI [16 (link)]. The primary antibodies were as follows: anti-B7H4 (1:100 dilution, Cat. ab252438, Abcam, Cambridge, UK), anti-PDL1 (1:500 dilution, Cat. ab237726, Abcam, Cambridge, UK) and anti-CD8 (1:200 dilution, Cat. ab101500, Abcam, Cambridge, UK). The expression levels of B7H4 and PDL1 were evaluated according to the previous method. For CD8 staining, infiltration level was assessed by estimating the percentage of cells with strong intensity of membrane staining in the stroma cells. For stratification, the B7H4 and PDL1 levels were classified as high/low using the top 50-percentile of the cohort scores as stratification cut-point.
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7

Protein Extraction and Western Blot Analysis

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Total protein was extracted and separated through radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China). The protein was identified by incubating with specific primary antibodies FUBP1 (ab213525, 1:2000; Abcam, Cambridge, MA, USA), PD-L1 (ab237726, 1:1000; Abcam), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (ab9485, 1:2500; Abcam). Next, the membranes were incubated with horseradish peroxidase (HRP)-conjugated goat anti-rabbit immunoglobulin G secondary antibody (ab205718, 1:3000; Abcam). GAPDH was used to normalize analyzed samples.
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