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10 protocols using methylcellulose

1

Spheroid-Based Angiogenesis Assay

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Spheroids were prepared as previously described [28 (link)]. Briefly, transfected BAECs were cultured in DMEM containing 0.3% methylcellulose (Sigma-Aldrich), 10% FBS, 1% l-glutamine, and 1% penicillin/streptomycin in U-shaped 96-well plates for 24 h to allow spheroid formation. Spheroids were transferred in complete medium containing 50% collagen (Corning, Corning, NY, USA) pH 7.4, and 0.6% methylcellulose and cultured for 24 h before fixation in 4% PFA. Image acquisitions were performed using an inverted Axio-observer Z1 epifluorescent microscope (Zeiss, Germany) with a 20 × objective. The numbers of sprouts and filopodia lengths were determined manually using ZEN Blue 2.3 (Zeiss). Filopodia were defined as actin-rich extensions from the tip-cells of the sprout with < 0.1 μm diameter. For length quantification, only filopodia visible in one focus plane were manually counted by drawing lines from the bases of the cells to the tips of the filopodia using the line tool of ZEN Blue.
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2

Quantification of Viral Titers in PECs

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PECs were harvested by peritoneal lavage with 10 ml of complete D5 ((DMEM (Corning), 5% FBS (Biowest), 2mM L-glutamine (Gibco), 1% HEPES (Corning), 10 U/mL Penicillin and 10 μg/mL streptomycin sulfate (Corning)) and washed once. The PECs were resuspended in 1 ml of D5, then were homogenized with 1 mm zirconia beads (BioSpec Products) in a Precellys 24 (Bertin Instruments) at 5000 rpm for 1 min. 10-fold serial dilutions were plated on 3T12s. Virus was absorbed for 1 hour at 37 degrees C before 1% (w/v) methylcellulose (Sigma-Aldrich) (10 g methylcellulose in 1L MEM (Corning)) was added as an overlay. Plates were incubated at 37 degrees C in 5% CO2 for 7 days before fixing with 2% formaldehyde and staining with 0.1% crystal violet (Sigma-Aldrich).
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3

Endothelial Cell Spheroid Angiogenesis Assay

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HUVECs were trypsinised and resuspended in ECM culture medium containing 0,6 gr/L methylcellulose (Sigma Aldrich). Cells were seeded (400 cells per well in 100 µl) in U-bottom 96 well plates (Costar) and cultured for 24 h at 37 °C and 5% CO2 to allow for formation of spheroids. The spheroids were collected and resuspended in FBS (Sciencell) containing 2,4 gr/L methylcellulose and mixed 1:1 with collagen I solution containing 3,77 g/L collagen I (Corning, USA), 10% M199 medium (Sigma Aldrich), 0,018 M HEPES and 0.2 M NaOH to adjust pH to 7,4. The mixture with the spheroids was allowed to polymerize for 30 min in a 24 well plate. To induce sprouting, 100 µl of ECM with or without VEGF (50 ng/mL, Preprotech) was added to the gels. Spheroids were fixed after 24 h using 10% fomaldehyde in PBS and visualized using an Olympus IX50 microscope. The cumulative sprout length per spheroid was measured using ImageJ software.
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4

Quantification of Viral Titers in PECs

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PECs were harvested by peritoneal lavage with 10 ml of complete D5 ((DMEM (Corning), 5% FBS (Biowest), 2mM L-glutamine (Gibco), 1% HEPES (Corning), 10 U/mL Penicillin and 10 μg/mL streptomycin sulfate (Corning)) and washed once. The PECs were resuspended in 1 ml of D5, then were homogenized with 1 mm zirconia beads (BioSpec Products) in a Precellys 24 (Bertin Instruments) at 5000 rpm for 1 min. 10-fold serial dilutions were plated on 3T12s. Virus was absorbed for 1 hour at 37 degrees C before 1% (w/v) methylcellulose (Sigma-Aldrich) (10 g methylcellulose in 1L MEM (Corning)) was added as an overlay. Plates were incubated at 37 degrees C in 5% CO2 for 7 days before fixing with 2% formaldehyde and staining with 0.1% crystal violet (Sigma-Aldrich).
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5

Sphere Formation Assay for CSCs

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Cells were plated into ultra-low attachment 96-well plates (Corning) at 500 cells/well density and cultured in DMEM/F12 (Gibco) supplemented with B27 (Invitrogen), 20 ng/ml epithelial growth factor (EGF, Sigma-Aldrich), 20 ng/ml basic fibroblast growth factor (bFGF, PeproTech), and 1% methylcellulose (Sigma-Aldrich). EV and VLDLR overexpressed cells were cultured for 10 days, while shNC and shVLDLR cells were cultured for 12 days. Each experiment was repeated three times. For serial sphere experiment, cells were plated into ultra-low attachment six-well plates (Corning) at 5,000 cells/well density and cultured without methylcellulose. One week later, single cells from digested spheres were used for the next generation of sphere formation. The spheres were photographed and counted under an inverted microscope (Olympus).
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6

HUVEC Spheroid-Sprouting Angiogenesis Assay

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Human umbilical vein endothelial cells (HUVECs) were trypsinized and resuspended in ECM culture medium (Sciencell, USA) containing 0.6 gr/L methylcellulose (Sigma). Cells were seeded (400 cells per well in 100 µl) in U-bottom 96 well plates and cultured for 24 h at 37 °C and 5% CO2 to allow for the formation of spheroids. The spheroids were collected and resuspended in FBS (Sciencell) containing 2.4 gr/L methylcellulose and mixed 1:1 with collagen I solution containing 3.77 g/L collagen I (Corning, USA), 10% M199 medium (Sigma), 0.018 M HEPES, and 0.2 M NaOH to adjust pH to 7.4. The mixture with the spheroids was allowed to polymerize for 30 min in a 24 well plate. A total of 100 µl of conditioned medium with or without VEGF (50 ng/mL) (Preprotech) was added to the gels. Spheroids were visualized after 24 h using an Olympus IX50 microscope. The cumulative sprout length per spheroid was measured using ImageJ software.
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7

HUVEC Spheroid Sprouting Angiogenesis Assay

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After 24-h transfection, HUVECs were trypsinized and resuspended in ECM culture medium containing 0.6 g/L methylcellulose (Sigma Aldrich). Spheroids were formed by seeding HUVECs (400 cells per well in 100 μL) in U-bottom 96-well plates (Costar) and culturing for 24 h at 37 °C and 5% CO2. Spheroids were resuspended in FBS (Sciencell) containing 2.4 g/L methylcellulose (dissolved in ECM) and mixed 1:1 with collagen-I solution (3.77 g/L collagen-I (Corning, USA), 10% M199 medium (Sigma Aldrich), 0.018 M HEPES, and 0.2 M NaOH to adjust pH to 7.4). In a 24-well plate, 1 mL of the mixture was added per well and polymerized for 30 min at 37 °C. In total, 100 μL of ECM with or without VEGF (50 ng/mL, Preprotech) was added. Spheroids were fixed after 24 h using 10% formaldehyde in PBS and visualized using a Zeiss DMIL LED microscope. The cumulative sprout length per spheroid was measured using ImageJ software.
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8

Plaque Assay for SARS-CoV-2 Quantification

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Vero E6 cells were seeded in six-well plates (BD Falcon) with 5 × 105 cells/well in 5% DMEM 24 h prior to infection and checked to verify ≥80% confluency. Ten-fold dilutions of virus, respiratory secretions, and/or scRNA-seq emulsion in serum-free DMEM (200 μL)were incubated on Vero E6 monolayers for 1 h absorption at 37°C with rocking at 15-min intervals. After absorption, cells were overlaid with 2% methylcellulose (MilliporeSigma) in 2% DMEM for 72 h at 37°C in a 5% CO2, humidified incubator. At 72 h postinfection (hpi), methylcellulose was carefully removed and cells were gently rinsed once with 1× HBSS (Corning Life Sciences). Monolayers were fixed and plaques visualized with a solution of 0.4% crystal violet by weight in 80% methanol (MilliporeSigma) and 4% PFA (Electron Microscopy Sciences) for 20 min at RT.
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9

Plaque Assay for SARS-CoV-2 Quantification

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Vero E6 cells were seeded in six-well plates (BD Falcon) with 5 × 105 cells/well in 5% DMEM 24 h prior to infection and checked to verify ≥80% confluency. Ten-fold dilutions of virus, respiratory secretions, and/or scRNA-seq emulsion in serum-free DMEM (200 μL)were incubated on Vero E6 monolayers for 1 h absorption at 37°C with rocking at 15-min intervals. After absorption, cells were overlaid with 2% methylcellulose (MilliporeSigma) in 2% DMEM for 72 h at 37°C in a 5% CO2, humidified incubator. At 72 h postinfection (hpi), methylcellulose was carefully removed and cells were gently rinsed once with 1× HBSS (Corning Life Sciences). Monolayers were fixed and plaques visualized with a solution of 0.4% crystal violet by weight in 80% methanol (MilliporeSigma) and 4% PFA (Electron Microscopy Sciences) for 20 min at RT.
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10

Spheroid-based Angiogenesis Assay

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HUVECs were trypsinised and resuspended in ECM culture medium containing 0,6 gr/L methylcellulose (Sigma Aldrich). Cells were seeded (400 cells per well in 100 µl) in U-bottom 96 well plates (Costar) and cultured for 24 hours at 37°C and 5 % CO 2 to allow for formation of spheroids. The spheroids were collected and resuspended in FBS (Sciencell) containing 2,4 gr/L methylcellulose and mixed 1:1 with collagen I solution containing 3,77 g/L collagen I (Corning, USA), 10 % M199 medium (Sigma Aldrich), 0,018 M HEPES and 0.2 M NaOH to adjust pH to 7,4. The mixture with the spheroids was allowed to polymerize for 30 minutes in a 24 well plate. To induce sprouting, 100 µl of ECM with or without VEGF (50 ng/mL, Preprotech) was added to the gels. Spheroids were xed after 24 hours using 10 % fomaldehyde in PBS and visualized using an Olympus IX50 microscope. The cumulative sprout length per spheroid was measured using ImageJ software.
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