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4 protocols using alexa fluor 568 coupled phalloidin

1

Quantification of Matrix Degradation

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Cover slips were coated with 0.2 mg/ml FITC-coupled gelatine (G13187, Molecular Probes) and subsequently blocked using complete media. The siRNA-treated cells were seeded on the cover slips and incubated at 37°C for 4 hours and fixed with 4% PFA. The cells were labelled with Alexa Fluor 568-coupled phalloidin (A12380, Molecular Probes) and mounted in anti-fade with DAPI (P36931, Molecular Probes). Cells were imaged on a Leica SP5 confocal microscope. The images were processed using ImageJ (Wayne Rasband, NIH). Matrix degradation was quantified by measuring the area where the FITC labelled-gelatine was below the threshold and counting the number of cells using ImageJ, as described before31 .
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2

Quantification of Matrix Degradation

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Cover slips were coated with 0.2 mg/ml FITC-coupled gelatine (G13187, Molecular Probes) and subsequently blocked using complete media. The siRNA-treated cells were seeded on the cover slips and incubated at 37°C for 4 hours and fixed with 4% PFA. The cells were labelled with Alexa Fluor 568-coupled phalloidin (A12380, Molecular Probes) and mounted in anti-fade with DAPI (P36931, Molecular Probes). Cells were imaged on a Leica SP5 confocal microscope. The images were processed using ImageJ (Wayne Rasband, NIH). Matrix degradation was quantified by measuring the area where the FITC labelled-gelatine was below the threshold and counting the number of cells using ImageJ, as described before31 .
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3

Imaging Actin Cytoskeleton in AML Cells

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AML cells grown on poly-L-lysin coated chamber slides (Ibidi) were fixed with 4% paraformaldehyd/PBS for 10 min 37 °C. After washing the cells 3-times with PBS, they were incubated with Alexa-fluor 568-coupled phalloidin (Thermo Fisher Scientifics, Waltham, MA, USA), diluted 1:1000 in PBS, for 30 min at RT. Thereafter, the cells were washed again 3-times with PBS and stained with 4′,6-Diamidin-2-phenylindo (1:2000 in PBS) for 5 min at RT. After final washing, fluorescence was analyzed by the Keyence BZ 9000 microscope.
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4

Immunofluorescence Analysis of Cell Adhesion

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The mouse anti-paxillin antibody was purchased from BD Biosciences (610052) and the corresponding secondary Alexa488 anti-mouse antibody from ThermoFisher Scientific (A-11029). The rabbit anti-fibronectin antibody was obtained from Sigma (F3648) and the corresponding secondary Alexa647 anti-rabbit antibody from ThermoFisher Scientific (A-21245). Alexa Fluor 568-coupled phalloidin was from ThermoFisher Scientific (A12380). Rat anti-E-cadherin antibody was obtained from ThermoFisher Scientific (13-1900), rabbit anti-ZO1 antibody from ThermoFisher Scientific (61-7300), mouse anti-vimentin antibody from Sigma (V2258), mouse anti-SMAD2/3 from BD Biosciences (610842), rabbit anti-p-SMAD3 from Cell Signaling (p-Ser423/425; 9520) and mouse anti-GAPDH from Sigma (G8795). For quantitative immunoblot analysis, secondary antibodies from LI-COR Biosciences, IRDye 680RD Goat anti-Mouse (926-68070) and IRDye 800CW Goat anti-Rabbit (926-32211) were used. DAPI was acquired from Sigma (D9542), recombinant human TGFβ1 protein from R & D Systems (240B-0-10), 16% paraformaldehyd (PFA) from Electron Microscopy Services (15710-S), fatty-acid free BSA from Calbiochem (126575), Trypsin/EDTA from Sigma (T4174), PBS from Gibco (14200-067), and Triton X-100 from Sigma (X-100).
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