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Myiq real time system

Manufactured by Bio-Rad
Sourced in United States, Canada

The MyiQ real-time system is a laboratory instrument designed for real-time PCR (polymerase chain reaction) analysis. It provides precise and sensitive detection and quantification of target DNA or RNA sequences. The system utilizes a fluorescence-based detection method to monitor the amplification of nucleic acid samples in real-time during the PCR process.

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5 protocols using myiq real time system

1

Quantitative RT-PCR Analysis of Plant Transcripts

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Total RNA was extracted using the RNeasy plant mini kit (Qiagen), treated with DNase I (Qiagen) and reverse transcribed by using the SuperScriptTM first-strand synthesis system (Invitrogen). Real-time quantitative RT-PCR (qRT-PCR) was performed by using the MyiQ real-time system (Bio-Rad) and the iQ SYBR-Green Supermix (Bio-Rad). UBQ10 was used as internal control for sucrose-related and light-related experiments. All qRT-PCR reactions were performed in three technical replicates using total RNA samples extracted from three independent biological replicate samples. The PCR primers used are listed in Supplementary Table S1.
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2

Barley Seed RNA Extraction and qRT-PCR

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At least 30 barley seeds were used for RNA extraction. Total RNA from germinated seeds was extracted with an RNAprep Pure Plant kit (Tiangen, Beijing, China). The first strand of cDNA was synthesized from 1.5 μg of total RNA in a 30 μl reaction volume with a FastQuant RT kit (Tiangen, Beijing, China). qRT‐PCR was performed in 96‐well blocks on a MyiQ real‐time system (Bio‐Rad, California, USA) using the 2 × SYBR Premix UrTaq II (Nobelab, Beijing, China). Three biological replicates were included for each sample. α‐Tubulin was used as an internal control to normalize expression of the target genes. The primers for qRT‐PCR were used in previous studies (Shen et al., 2020 (link); Sheng et al., 2018 (link)), and their details are shown in Supplemental Table S1.
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3

Spatial and Temporal Expression Analysis of Rice Genes

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Rice tissue samples of ZH11 for spatial expression analysis of Osl2 and GWD1 were collected from 14‐day‐old whole seedlings or the leaf, seed, root, stem and leaf sheath of mature rice plant (10 DAF). Leaf samples for temporal expression analysis of Osl2 were collected from ZH11 mature rice plants 0, 5, 10, 15 and 20 DAF respectively. Leaf samples for expression analysis of GWD1 in its transgenic rice or mutants were from homozygous plants 10 DAF (T2 generation). Then, total RNA was extracted from the collected rice samples using the RNAsimple Total RNA Kit (Tiangen, Beijing, China), after which it was treated with DNase I (Qiagen, Hilden, Germany) to remove residual genomic DNA. 1 μg samples of total RNA were reverse‐transcribed using the SuperScript™ First‐Strand cDNA Synthesis System (Invitrogen, Carlsbad, CA). qRT‐PCR assays were then performed on a MyiQ Real‐Time system (Bio‐Rad, CA) using Actin as the reference gene for normalization of gene expression. The primer pairs used for expression analysis of Osl2 and GWD1 were Osl2qRT‐F/Osl2qRT‐R and GWD1qRT‐F/GWD1qRT‐R respectively. Each experiment consisted of three biological replicates, and the primer sequences are given in Supplementary Table S4.
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4

Quantitative Gene Expression Analysis of Developing Rice Endosperm

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Total RNA was extracted from developing endosperms of dehulled seeds harvested at 15 DAF. The first-strand cDNA used as the template, was synthesized by using a PrimeScript RT reagent kit (Takara, Kusatsu, Japan). The quantitative real-time reverse transcription PCR (qRT-PCR) was performed on the MyiQ real-time system (Bio-Rad) using AceQ q-PCR SYBR Green Master Mix (Vazyme). The rice Actin1 gene was used as the internal control to normalize gene expression. The primers used for qRT-PCR are listed in Additional file 2: Table S1. The experiments were performed in triplicate for each sample.
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5

Quantifying gene expression and protein interactions

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Total RNA was extracted using the RNeasy plant mini kit (Qiagen), treated with DNase I (Qiagen) and reverse transcribed by using the SuperScript first-strand synthesis system (Invitrogen). qRT-PCR was performed by using the MyiQ real-time system (Bio-Rad) and the iQ SYBR-Green Supermix (Bio-Rad). Ubiquitin Conjugase (UBC) and ACTIN1 (ACT1) were used as internal controls for BR-related and light-related experiments, respectively. Primer sequences of genes tested in qRT-PCR were listed in Supplemental Table 1.
In Vitro Pull-Down and the Semi-In Vivo Pull-Down Assays GST-HY5, GST-HY5N, GST-HY5C and MBP-BZR1, MBP-BZR1N, MBP-BZR1C were respectively expressed in the Escherichia coli strain BL21 by induction with 0.3 mM isopropyl b-D-1-thiogalactopyranoside. The GST and MBP fusion proteins were purified by using glutathione-Sepharose beads (GE Healthcare) or amylose agarose beads (New England Biolabs), respectively. The in vitro pull-down assay of MBP-BZR1 and GST-HY5 interaction followed the procedure described previously (Li et al., 2012) .
For the semi-in vivo pull-down assay, protein extracts from 12-day-old 35S::mBZR1-Myc transgenic seedlings treated with or without BL
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