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14 protocols using rabbit anti gfap

1

Immunohistochemical Analysis of Astrocytes and Microglia

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Immunohistological studies were performed using 30 µm-thick frozen brain coronal sections that were obtained through cryo-sectioning and preserved in phosphate-buffered saline (PBS) 1× until analysis. After the treatment with citrate buffer (0.01 M citric acid, 0.05% Tween 20, pH 6.0) at 70 °C for 50 min, samples were washed thoroughly with a solution of 2% immunoglobulin (Ig)G-free albumin (Sigma, St Louis, MO, USA) in TBS for 20 min at room temperature. Brain sections were then incubated overnight at 48 °C with either rabbit anti-GFAP (Invitrogen, Carlsbad, CA, USA) or anti-Iba-1 (Wako Chemicals Inc., Richmond, VA, USA) in TBS-2% BSA to detect astrocytes and microglia, respectively. After washing, sections were incubated for 1 h at room temperature with AlexaFluor 594 goat anti-rabbit IgG (Molecular Probes, Eugene, OR, USA) diluted in TBS-2% BSA. Sections were mounted onto glass slides in Vectashield medium (Vector Laboratories, Burlingame, CA, USA) containing 4′,6-diamidino-2-phenylindole (DAPI) to visualize nuclei The mean fluorescence intensity was quantified using Image J software (National Institute of health, Bethesda, MD, USA). Three mice for each experimental condition were analyzed.
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2

Immunofluorescence Staining of Mouse Brain Sections

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The half of each brain obtained as described above was fixed in 4 % buffered formalin at 4 °C overnight. Free-floating 30 μm-thick mouse brain sections were processed as previously described [33 (link)]. After antigen retrieval by incubating in citrate buffer (0.01 M citric acid, 0.05 % Tween 20, pH 6.0) at 70 °C for 50 min, samples were thoroughly washed several times with TBS and blocked with a solution of 2 % IgG-free albumin (Sigma) in TBS for 20 min at room temperature. Brain sections were then incubated overnight at 4 °C with rabbit anti-GFAP (Invitrogen) or anti-Iba-1 (WAKO, VA) polyclonal antibody in TBS-2 % BSA to detect astrocytes or microglia, respectively. After washing, sections were incubated for 1 h at room temperature with AlexaFluor 594 goat anti-rabbit IgG (Molecular Probes, OR) diluted in TBS-2 % BSA. Samples were mounted onto glass slides in Vectashield medium (Vector Laboratories, CA) containing DAPI for nuclei imaging. Samples were viewed on an Olympus Ix51 microscope equipped with a DP71 camera (Nikon Instruments Inc., NY).
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3

Immunohistochemical Staining of Mouse Brain

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Mice were anesthetized and perfused with PFA 4%. Brains were dissected, embedded in optimal cutting temperature (OCT, Tissue-Tek) and sectioned (10 μm) using a cryostat. For immunohistochemistry, slides underwent citrate buffer antigen retrieval and were then incubated with blocking solution (5% goat serum, 1% BSA, 0.05% Triton-X in PBS) for 1 hr. Then, slides were incubated overnight at 4°C with the following primary antibodies: rabbit anti -GFAP (1:200, Invitrogen), rabbit anti-DARPP-32 (1:50, Abcam), and mouse anti-TH (1:200, Sigma). Then, sections were incubated with the secondary antibody Alexa Fluor 488 and 568 (1:500; Invitrogen) for 1 hr. The nuclei were counterstained with 4, 6-diamidino-2-phenylindole (DAPI; 1:1000; Sigma-Aldrich).
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4

Immunofluorescence Staining of Cells and Brain Tissue

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Cell culture on coverslip were fixed with 4% PFA for 8min
and quenched with 10mM Glycine for 30min and then blocked in blocking buffer
(0.02% Triton X-100 and 5% normal donkey serum in PBS) for
20min and incubate with primary antibodies for 40min at room temperature.
Cryosections (12-μm thick) or vibratome sections (50-μm
thick) were permeabilized and blocked in blocking buffer (0.3%
Triton X-100 and 5% normal donkey serum in PBS) for 1 h at room
temperature and overlaid with primary antibodies overnight at 4 °C.
Antibodies used in the study were: rabbit anti-Olig2 (Millipore, AB9610),
rat anti-PDGFRα (BD Bioscience, 558774), mouse anti-APC (CC1,
Oncogene Research, OP80), goat anti-MBP (Santa Cruz Biotechnology,
sc-13914), rabbit anti-CHD8 (Abcam, ab84527), rabbit anti-GFAP (Invitrogen,
#13-0300), rabbit anti-cleaved caspase 3 (Cell Signaling Technology,
#9661), rabbit anti-GFP (Molecular Probes, #A-11122), Rabbit
Monoclonal anti-Sox10 (Abcam, ab180862), mouse anti-NeuN (Millipore,
MAB377). After washing with 0.2% Triton X-100 in PBS, cells or brain
sections were incubated with secondary antibodies conjugated to Cy2, Cy3 or
Cy5 (Jackson ImmunoResearch Laboratories) for 2 h at room temperature,
stained in DAPI for 5 min, washed in PBS and mounted with Fluoromount-G
(SouthernBiotech). Cell counting was carried out in a double-blind
manner.
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5

Spinal Cord Immunofluorescence Staining

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Spinal cord sections were processed as above. For immunofluorescence, slides were first desiccated for at least two hours and blocked with 5% Normal Donkey Serum with or without 0.3% Triton-X 100. Primary antibodies were incubated overnight at 4°C: goat anti-CXCL1 1:50 (R&D Systems, Minneapolis, MN), rabbit anti – GFAP 1:500 (Life Technologies, Carlsbad, CA), rat anti – Ly-6B.2 1:100 (Serotec, Raleigh, NC), rabbit anti - Iba11:500 (Wako Chemicals, Richmond, VA), rabbit anti – GST-π 1:1000 (MBL, Woburn, MA).
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6

Fluorescence Immunostaining of Retinal Cells

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Retinas were prepared as described for IB4-Alexa 594 staining, and incubated with primary antibodies in RSB at 4°C overnight. Primary antibodies included rabbit anti-GFAP (1∶200, Life Technologies), rat anti-GFAP (2 µg/ml, Life Technologies), rabbit anti-Pax2 (1 µg/ml, Life Technologies), and goat anti- PDGFRα (1 µg/ml, R&D Systems). For Pax2 and GFAP double IF staining, rabbit anti-Pax2 and rat anti-GFAP were used. Following incubation with primary antibodies, retinas were washed, and incubated overnight with appropriate secondary antibodies including goat anti-rabbit IgG-Alexa fluor®-488 (1∶200, Life Technologies), donkey anti-rat IgG-Cy3 (2 µg/ml, Jackson ImmunoResearch, , West Grove, PA), and donkey anti-goat IgG-Alexa fluor®-488. Stained retinas were washed thoroughly, and mounted in 50% glycerol in PBS. Images were taken with a Zeiss LSM 510 confocal microscope.
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7

Quantification of Inflammatory Cells in Spinal Cord

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Spinal cord sections were processed as described above. For immunofluorescence, slides were first desiccated for two hours and blocked with 5% Normal Donkey Serum with or without 0.3% Triton‐X 100. Primary antibodies were incubated overnight at 4°C: goat anti‐CXCL1 1:50 (R&D Systems, Minneapolis, MN), rabbit anti‐GFAP 1:500 (Life Technologies, Carlsbad, CA), and rat anti‐Ly6B.2 1:100 (Serotec, Raleigh, NC). Images were analyzed using the Image J software (NIH) according to previously described methods 61, 62. Quantification of Ly6B.2‐positive cells within spinal cords of experimental mice was determined by counting cells in a minimum of five spinal cord sections/per mouse with a minimum of three mice per group.
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8

Spinal Cord Immunofluorescence Analysis

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Spinal cord sections were processed as described above. For
immunofluorescence, slides were first desiccated for two hours and blocked with
5% Normal Donkey Serum with or without 0.3% Triton-X 100.
Primary antibodies were incubated overnight at 4°C: goat anti-CXCL1 1:50
(R&D Systems, Minneapolis, MN), rabbit anti-GFAP 1:500 (Life
Technologies, Carlsbad, CA), and rat anti-Ly6B.2 1:100 (Serotec, Raleigh, NC).
Images were analyzed using the Image J software (NIH) according to previously
described methods [62 (link), 63 (link)]. Quantification of
Ly6B.2-positive cells within spinal cords of experimental mice was determined by
counting cells in a minimum of 5 spinal cord sections/per mouse with a minimum
of 3 mice per group.
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9

Multimodal Analysis of Neuroinflammation

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Immunofluorescence microscopy was performed on 35-μm brain slices containing the region of interest (see Additional file 1: Figure S1a). The following primary antibodies were used: rabbit-anti Iba-1 (1:500, Wako); rabbit anti-GFAP (1:250, Thermo Fisher); mouse monoclonal anti-NeuN (1:250, Millipore); goat anti-IL-13 (1:50, R&D system), rabbit anti-3-Nitrotyrosine (3-NT, 1:200, Millipore). After washing, a combination of secondary antibodies was used for detection: 488 Alexa goat anti-rabbit, 594 Alexa goat anti-mouse IgG1 (Invitrogen). Slides were counterstained with DAPI and were cover-slipped in Fluoromount. Digital images were taken using a Zeiss LSM 710 laser scanning confocal microscope (LSCM). Tyrosine Hydroxylase DAB Immunohistochemical analysis was performed using rabbit anti-Tyrosine Hydroxylase, (1:10000; Millipore), incubated with a biotinylated goat-anti rabbit antibody (1:400; Vector Labs) for 1 h at RT and then stained with Vectastain ABC Kit (Standard) and DAB Peroxidase Substrate (Vector Labs). For cresyl violet (CV) staining (Nissl), adjacent sections were mounted on positive charged slides and air-dried. The slides were soaked in CV solution (0.25% cresyl violet and 0.3% acetic acid) for 15 min (warmed at 50 °C), were dehydrated with alcohol and xylene, and were cover-slipped with Vectamount.
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10

Immunoblotting and Immunofluorescence Analysis

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The following primary antibodies were used for immunoblotting (IB) and immunofluorescence (IF). Rat anti‐Serpin A1a (#MAB7690, IB, IF), rat anti‐Serpin C1 (#MAB1287, IB, IF, both from R&D Systems, Minneapolis, MN), mouse anti‐UBQLN2 #NBP2‐25164, IB, IF, Novus Biologicals, Littleton, CO), mouse anti‐neuroserpin (#66997‐1, IB, IF, Proteintech Group, Inc, Rosemont, IL), mouse anti‐ubiquitin (sc‐8017, Santa Cruz Biotechnology, IB, Santa Cruz, CA), Rabbit anti‐GFAP (#PA1‐10019 IF, Thermo Fisher Scientific), rabbit anti‐IBA1 (#019‐19741, IF, FUJIFILM Wako Pure Chemicals, Corp, Richmond, VA), rabbit anti‐Serpin B1 (#PA576875, IB, IF, Thermo Fisher Scientific), rabbit anti‐Serpin C1/antithrombin III (#NBP2‐76966, IB, Novus Biologicals), rabbit anti‐LC3A/B (#4108, IF, Cell Signaling Technology, Danvers, MA, USA), rabbit anti‐Myc (UMY81, IB, home‐made against a peptide with an amino acid sequence of MEQKLISEEDLN), rabbit anti‐Neuroserpin (#ab33077, IB, IF, abcam, Eugene, OR), rabbit anti‐p97/VCP (UMY475, IB, home‐made), rabbit anti‐UBQLN2 (#23449‐1‐AP, IF Proteintech Group, Inc.), goat anti‐ChAT (#AB144P, IF, Millipore‐Sigma, Burlington, MA), and goat anti‐LAMP1 (sc‐8098, IF, Santa Cruz Biotechnology (Dallas, TX, USA).
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