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Donkey anti rabbit igg alexa 594

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Donkey anti-rabbit IgG-Alexa 594 is a secondary antibody conjugated with Alexa Fluor 594 dye. It is designed to detect and bind to rabbit primary antibodies, allowing for fluorescent visualization of target proteins or molecules in various applications such as immunohistochemistry, Western blotting, and flow cytometry.

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9 protocols using donkey anti rabbit igg alexa 594

1

Immunoblotting and Immunofluorescence Assay Protocol

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The primary and conjugated antibodies used in this study are listed in Table S1. Secondary antibodies used for Western blot were goat anti-mouse IgG HRP (BioRad; 1:3000) and polyclonal goat anti-Rabbit IgG HRP (Dako; 1:5000). Secondary antibodies used for immunofluorescence were donkey anti-rabbit IgG Alexa 594 (Invitrogen A21207; 1:400), goat anti-mouse IgG Alexa 568 (Invitrogen A11004; 1:200) and goat anti-guinea pig Alexa 488 (Invitrogen A11073; 1:200). The PP2 and PP3 compounds were purchased from Merck Chemical Ltd. EGF and PDGF-BB were obtained from Sigma-Aldrich. HGF was obtained from R&D Systems and staurosporine was from Tocris Bioscience. The polyclonal rabbit antibodies against the phosphorylated Y1440 and Y1422 sites on β4 are homemade (method described in supplemental materials).
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2

Immunofluorescent Analysis of Gpr40 in Mice

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Skin biopsies were taken from the backs of mice. Mouse skin sections were routinely fixed with formalin and embedded in paraffin. After demasking with Protease XXIV (Sigma-Aldrich, USA) in 20 mM Tris pH 7.9, the skin sections were incubated with the primary antibody against Gpr40 (1:1000, Santa Cruz, sc-28416), followed by incubation with donkey anti-rabbit IgG Alexa 488 (Invitrogen, USA). Sections were mounted with 4ʹ,6-diamidino-2-phenylindole (DAPI).
For cell staining, 10% formalin to was added to the dish and fixed at room temperature for 10 min. Cells were then permeabilized with 0.1% Triton ×100 for 10 min. After blocking with 10% normal goat serum for 1 h at room temperature, were incubated with the primary antibody against Gpr40 (1:1000, Santa Cruz, sc-28416) overnight at 4°C, followed by incubation with donkey anti-rabbit IgG Alexa 594 (Invitrogen, USA). Sections were mounted with 4ʹ,6-diamidino-2-phenylindole (DAPI). Fluorescent signals were visualized with a fluorescent microscope.
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3

Immunostaining of IFITM3 in Mouse Brain

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Brains were harvested and then fixed for 24 h in 4% PFA at 4 °C. The brains were then transferred to 30% sucrose solution in PBS for an additional 24 h prior to generating 30 µm coronal sections with a frozen microtome (Micron HM 450, Thermo Fisher Scientific, Waltham, MA, USA). To begin immunostaining, sections were washed with PBS, incubated with blocking buffer (10% goat serum, 0.3% Trion X-100 in PBS), and incubated overnight at 4 °C with the following primary antibody: Rabbit anti-IFITM3 antibody (Thermo Fisher Scientific, Waltham, MA, USA). We used a donkey anti-rabbit IgG-Alexa 594 (1:200, Thermo Fisher Scientific, Waltham, MA, USA) as the secondary antibody. Sections were incubated with DAPI (4′,6-diamidino-2-phenylindole) to label nuclei. Images were obtained using a Leica TCS SPE confocal system and a Leica DMi8 fluorescence microscope system (Leica Biosystem, Richmond, IL, USA). Multiple images of the whole brain or individual hemispheres were captured with the 10× objective and stitched to generate a single high-resolution image (Leica LAS X software ver. 3.6.0.20104, Leica Biosystem, Nussloch, German). Image analysis was performed using ImageJ software (ver. 1.53q, National Institutes of Health, Bethesda, MD, USA).
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4

Immunostaining of Cells for CK18 and CAR

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Cells were fixed at days 9, 11, 14, 16, 18, 21, 23, and 25 by incubation in 4% formaldehyde (Cat. No. 02176, Histolab) for 10 min at RT. The cells were permeabilized by incubation in 1% Triton X-100 (Cat.No. T8787, Sigma-Aldrich) in D-PBS +/+ (Cat. No. 14040-091, Gibco) for 15 min at RT, then the cells were blocked in 2% BSA (Cat. No. A9418, Sigma-Aldrich) in D-PBS +/+ for 60 min at RT. The cells were immunostained for the markers CK18 (Cat. No. MA5-12104, Invitrogen) and CAR (Cat. No. MA5-29208, Invitrogen). The antibodies were diluted in 0.1% BSA in D-PBS +/+ (1:100 for primary antibodies, and 1:1000 for secondary antibodies). The primary antibodies were incubated overnight at 4 °C. The secondary antibodies Goat anti-mouse IgG Alexa 488 (Cat. No. A11029, ThermoFisher), Donkey anti-rabbit IgG Alexa 594 (Cat. No. A21207, ThermoFisher), and DAPI were incubated in the dark for 2 h at RT. The photographs were processed by applying ImageJ software (http://imagej.nih.gov).
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5

Immunofluorescent Staining of Acoustic Cell Clusters

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The received tumor tissue and acoustic cell clusters were fixed in 4% paraformaldehyde followed by dehydration, paraffin embedding, sectioning, and standard H&E staining. Immunofluorescence was performed according to a previously published protocol. Briefly, POCCs were washed in PBS twice and blocked in 500 μL of blocking buffer for 60 min. The primary antibodies for EpCAM, CD3, and SMA were diluted at the ratio of 1:200 in the antibody dilution buffer. At the end of the blocking procedure, the blocking solution was aspirated completely. Acoustic cell clusters were incubated with primary antibodies at 4 °C overnight and washed 3 times with PBS solution. Secondary antibodies, Donkey anti-Rabbit IgG-Alexa 594 (Thermo Fisher, R37119), Donkey anti-Rat IgG-Alexa 488 (Thermo Fisher, A-21208), were diluted at a ratio of 1:500 in the antibody dilution buffer and samples were incubated with secondary antibodies for 2 h at room temperature in the dark. Then the samples were rinsed three times in PBS solution for 5 min each time. The acoustic cell clusters were immersed in a fructose-glycerol clearing solution and covered with coverslips. Stained samples were imaged using an X83 microscope.
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6

Immunofluorescence Staining of HEK293 and HeLa Cells

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HEK293 or HeLa cells were fixed with 4% paraformaldehyde and then permeabilized by treatment with PBS and 0.2% Triton-X100. The cells were blocked with 1% albumin in PBS and then incubated with primary antibodies. Subsequently, the cells were treated with one of the following appropriate secondary antibodies: Alexa 488 donkey anti-rabbit IgG, Alexa 594 donkey anti-rabbit IgG, Alexa 594 donkey anti-mouse IgG, Alexa Fluor 488 phalloidin, or Alexa Fluor 568 phalloidin (Molecular Probes). Cellular DNA was counterstained with DAPI (Dojindo). Images were captured using an Axioskop2 plus (Zeiss) fluorescent microscope equipped with Axiovision software.
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7

Dynein and Tubulin Immunostaining of Human Brain Sections

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Paraffin sections of autopsied human brains from 2 unaffected controls were double immunostained for candidate gene products. Staining was performed using a rabbit polyclonal antibody to the dynein heavy chain protein of motile cilia, DNAH14 30 (1:50; Sigma-Aldrich), or a mouse monoclonal antibody to the cilia a-tubulin protein 27 (1:500; Sigma-Aldrich). Staining was performed overnight at 4°C. For double labeling, sections were incubated with 2 secondary antibodies for 1 hour at room temperature: Alexa 488 donkey anti-mouse IgG (Molecular Probes, Inc.) and Alexa 594 donkey anti-rabbit IgG (Molecular Probes, Inc.). Nuclei were stained using ProLong Gold Antifade Reagent with 4' ,6-diamidino-2-phenylindole (Molecular Probes, Inc.). Sections were viewed, and images were captured using a Leica TCS SP5 confocal microscope (Leica Microsystems) with Leica Application Suite Advanced Fluorescence Lite 2.4.1 imaging-processing software (Lei ca Microsystems).
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8

Immunofluorescence Staining and Confocal Imaging

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For fluorescence staining, cell samples were fixed in 4% paraformaldehyde for 30 min at room temperature and washed three times with PBS (3 min each). The cells were then permeabilized and blocked with 2% normal donkey serum in 0.01 M PBS containing 0.3% Triton X‐100, 0.02% sodium azide and 0.12% carrageenan (pH 7.4, all reagents were purchased from Sigma‐Aldrich, St. Louis, MO, USA) for 1 hr at room temperature. Samples were subsequently incubated overnight at 4°C with the primary antibody. For double immunofluorescence, samples were incubated with a mixture of two primary antibodies followed by a mixture of the two respective secondary antibodies, Alexa 488 donkey anti‐mouse IgG (1:500, A21202, Invitrogen) or Alexa 594 donkey anti‐rabbit IgG (1:500, A21207, Invitrogen), and counterstained with DAPI (4′,6‐diamidino‐2‐phenylindole, 1:5000, Invitrogen). The following primary antibodies were used: mouse anti‐TNF‐α IgG (1:300, sc‐52746, Santa Cruz Biotechnology, San Diego, CA, USA), mouse anti‐IL‐10 IgG (1:300, sc‐57244, Santa Cruz Biotechnology) and rabbit anti‐β‐actin IgG (CW0096A, ComWin Biotech, Beijing, China; 1:2000). Confocal images were obtained using a confocal laser microscope (FV1000; Olympus, Tokyo, Japan), and digital images were captured with FluoView 1000 (Olympus).
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9

Immunofluorescence and Western Blot Antibody Protocols

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The following primary antibodies were used: rabbit polyclonal antibody against SMC2/hCAP-E (07–710, Upstate), mouse monoclonal antibody against hCAP-G (H00064151-M01, Novus Bio), and rabbit polyclonal antibody against hCAP-G2 (NB100–1813, Novus Bio). Secondary antibodies used for immunofluorescence were: Alexa 488 donkey anti-mouse IgG (Invitrogen), Alexa 594 goat anti-mouse IgG (Invitrogen), Alexa 488 goat anti-rabbit IgG (Invitrogen), and Alexa 594 donkey anti-rabbit IgG (Invitrogen). Centromere labeling was done using a labeled primary antibody (Texas red-conjugated CREST antibody, 15–235-T, Antibodies Inc). Secondary antibodies used in the western blots were: IRDye 800CW goat anti-mouse IgG, IRDye 680LT labeled goat anti-rabbit (Li-Cor).
Primary Fab fragment generation for anti-SMC2 was done using Papain digestion (Pierce, Fab Fragmentation Kit 44685) with fragmentation verified by SDS-PAGE. Secondary Fab fragments were purchased (Alexa 594-labeled goat-anti-rabbit Fab fragment, 111-587-003 Jackson ImmunoResearch).
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