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4 protocols using phosphatase inhibitor cocktail

1

Quantification of Human Amyloid-β 1-42 in Mice

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For the quantitation of human 1-42, a sandwich antibody ELISA was performed according to the manufacturer’s instructions (KHB3441, Invitrogen). The right side of the neocortex and hippocampus were homogenized in RIPA buffer (Sigma) containing a protease (Roche diagnostics) and phosphatase inhibitor cocktail (AG Scientific). The samples were centrifuged for 15 minutes at 13000 RPM, rotated for a further 30 minutes, and centrifuged again at 4 °C for 15 minutes at 13000 RPM. The resulting supernatant was removed and stored at −80 °C for protein analysis. The protein concentrations of samples were determined using the Bradford assay. Duplicate neocortex and hippocampus samples from APP/PS1 mice (n = 5/group) were diluted in the buffer provided (1:50). Soluble human 1-42 levels were normalized to total protein levels and expressed as picogram of 1-42 content per milligram of total protein (pg/mg). Optical densities were read at 450 nm on a microplate reader (SpectraMax, Molecular Devices), and concentrations of 1-42 were determined by comparison to the standard curve using a 4-parameter algorithm.
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2

Investigating scvhFGF19 Signaling in HepG2 Cells

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HepG2 hepatocellular carcinoma cells were cultured in DMEM media containing 10% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 μg/mL streptomycin until the mid-logarithmic phase, then transferred to a 96-well plate (5 × 103/well). After incubation at 37 °C for 24 h, the cells were starved in DEME supplemented with 0.4% FBS for 24 h prior to treatment of the purified scvhFGF19. HepG2 cells were treated with 5 μg/mL scvhFGF19 at different concentrations for 15 min (or indicated time), followed by cell disruption with lysis buffer (25 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% NP-40, and 5% glycerol) containing protease inhibitor cocktail (Quartett GmbH, Germany) and phosphatase inhibitor cocktail (AG Scientific, San Diego, CA, USA). Following centrifugation at 12,000× g and 4 °C for 20 min, total protein concentration of the supernatant was measured using the BCA kit (ThermoFisher Scientific, Waltham, MA, USA) and separated by SDS-PAGE. From the lysates, biological activity of scvhFGF19 was analyzed by immunoblotting with antibodies against Erk1/2 (Cell Signaling Technology, Danvers, MA, USA), phosphorylated Erk1/2 (Cell Signaling Technology), and α-tubulin (Sigma-Aldrich, St. Louis, MO, USA).
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3

Western Blot Analysis of Metabolic Markers

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Tissues were homogenized in lysis buffer containing 10% SDS and phosphatase inhibitor cocktail (A.G. Scientific Inc., CA, USA). Lysates were clarified at 12000 rpm, 4ºC for 20 min. Proteins were electrophoresed, transferred to nitrocellulose membranes and probed overnight with specific antibodies against β-actin , LPL, PPAR-α, p-HSL, HSL, IL-1β, IL-6 or TNF-α as described previously 22 . Immunoblots were washed extensively and probed with appropriate horse-radish peroxidase conjugated secondary antibodies. Bands were visualized using Pierce® ECL Plus Western Blotting Substrate (Lumigen, Inc. Southfield, MI, USA).
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4

Axon Protein Extraction and Quantification

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Plating media was removed from microfluidic chambers and culture was rinsed with HBSS. Axons were harvested with RIPA buffer with protease (CompleteTM Mini Protease Inhibitor Cocktail tablets, Roche) and phosphatase inhibitors (Phosphatase Inhibitor Cocktail, A.G. Scientific), with protein pooled from 2 to 4 chambers per treatment group. Denatured protein samples (20 μg) were electrophoresed into Bolt®; 4–12% Bis-Tris gels (Invitrogen), transferred to PVDF membrane (Bio-Rad) and incubated overnight with primary antibodies acetylated tubulin (1:1,000 mouse, Sigma), tyrosinated tubulin (1:1,000 rabbit, Millipore), MAP1B (1:1,000 mouse, AbCam). The corresponding anti-rabbit or anti-mouse horseradish peroxidase conjugated secondary antibody (1:7,000, DAKO) was used as previously described (King et al., 2018 (link)). GAPDH (1:5,000 mouse, Millipore) was used as a loading control. Bands were visualized with enhanced chemiluminescence (ECL) solution-Luminata Forte Western horseradish peroxidase (HRP) substrate (Millipore) and images acquired with a Chemi-Smart 5000 Imaging System (Vilber Lourmat) equipped with Chemi-Capt 5000 software. Band intensity was measured as the integrated intensity using Fiji software. After standardizing to GAPDH, each value was calculated as a percentage of control samples (See Supplementary Figure 1).
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