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Dimethyl sulfoxide (dmso)

Manufactured by Duchefa Biochemie
Sourced in Netherlands

DMSO (Dimethyl Sulfoxide) is a versatile, aprotic polar solvent commonly used in various laboratory applications. It has a high boiling point, low viscosity, and high polarity, making it a useful solvent for a wide range of organic and inorganic compounds. DMSO is known for its ability to penetrate biological membranes and enhance the solubility and stability of various substances.

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55 protocols using dimethyl sulfoxide (dmso)

1

Evaluating MRS2312 Cytotoxicity in HCC

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Cell viability was determined by performing 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assays in 12-well plates (Duchefa, Haarlem, The Netherlands). In brief, the five HCC cell lines (HepG2, SK-Hep1, SNU449, Huh7 and Hep3B) were seeded at a density of 1.0 × 105 cells per well and incubated for 24 h at 37℃. The cells were exposed to different concentrations of MRS2312 (5, 10 and 20 µM) for 24 h, 48 h, 72 h and 96 h. Normal hepatic cells (HepaRG™) with P2Y2 overexpression were placed under hypoxic conditions for up to 96 h for the MTT assay. After incubation, 20 µl of MTT solution (5 mg/ml) was added to each well and the plates were incubated in the dark for 1 h. After removing the culture media, 400 µl of dimethyl sulfoxide (Duchefa) was added to each well in order to solubilize the intracellular formazan crystals. After 10 min, the optical density was assessed at 540 nm using a microplate reader (Sunrise™; Tecan, Männedorf, Switzerland). Cell survival was expressed as the percentage of absorbance of MTT-treated cells relative to that of untreated cells. All treatment groups were measured in triplicate.
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2

MTT Assay for Cell Viability

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Cells were plated in flat-bottom 96-well culture plates (1 × 104 cells per well). The cells were incubated with 0.5 mg/mL thiazolyl blue tetrazolium bromide (MTT; Sigma-Aldrich, St. Louis, MO, USA) for 4 hours at 37°C. The medium was discarded, and 200 μL of dimethyl sulfoxide (Duchefa Biochemie, Haarlem, The Netherlands) was added to each well to dissolve the formazan crystals in the cells. The absorbance was measured at 570 nm using a microplate reader (BioTek Instruments, Winooski, VT, USA).
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3

Prenylated Isoflavonoid Protocol

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Glabridin (97%) was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan), and wighteone (96%) was purchased from Plantech UK (Reading, United Kingdom). Myriocin (≥95%) and fluconazole (≥98%) were supplied by Sanbio B.V. (Uden, the Netherlands). Stock solutions of the two prenylated isoflavonoids myriocin and fluconazole were prepared in dimethyl sulfoxide (DMSO) (Duchefa Biochemie, Harleem, the Netherlands). Components for YPD (1% [wt/vol] yeast extract, 2% bacto-peptone, 2% glucose) were purchased from Oxoid, Ltd. (Basingstoke, United Kingdom), unless stated otherwise. Sodium chloride and isopropanol were supplied by Fisher Scientific (Loughborough, United Kingdom). Sodium acetate, EDTA, glycerol, tryptophan, chloroform, Tri reagent, diethyl pyrocarbonate (DEPC), water, and glass beads (diameter of 425 to 600 μm) were supplied by Sigma-Aldrich (Dorset, United Kingdom). HCl was purchased from Honeywell Fluka (United Kingdom) and SDS from Melford Laboratories, Ltd. (Suffolk, United Kingdom).
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4

Zymosan-Induced Monocyte Viability Assay

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The THP-1 cells from the above-mentioned NF-κB assay were used to establish the viability of the monocytes after exposure to an increasing dose of zymosan or zymosan and TCP-25. In brief, 20 μl of MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] solution (5 mg/ml) were added to the cells and incubated for 90 min at 37°C. MTT is a yellow tetrazolium salt that is converted to insoluble purple formazan crystals by metabolically active cells, which are used as an indicator. At the end of incubation, the supernatant in the wells was carefully removed, and the formazan-formed crystals were dissolved in 100 μl of dimethyl sulfoxide (Duchefa Biochemie, Haarlem, Netherlands). The plate was then incubated at RT for 30 min on a shaker at low speed to allow for the solubilization of all crystals. The absorbance at 550 nm was then measured. A positive control was obtained by adding, to the untreated cells, a lysis buffer (Thermo Scientific, Rockford, IL, USA) and incubating at 37°C for 40 min before adding MTT. The absorbance value for untreated cells was considered to be 100%, and values for other treatments are shown in comparison to the untreated cells.
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5

MTT Assay for Cell Viability

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Cells were plated on flat‐bottom 96‐well culture plates (1 × 104 cells per well) and incubated for 4 h with 0.5 mg·mL−1 thiazolyl blue tetrazolium bromide (Sigma‐Aldrich). The resulting methylthiazole tetrazolium formazan crystals were treated with dimethyl sulfoxide (Duchefa Biochemie, Haarlem, The Netherlands). The absorbance of the sample at 540 nm was measured using a microplate reader (BioTek Instruments, Winooski, VT, USA).
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6

Osteoclastogenesis Inhibition Protocol

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Fetal bovine serum (FBS), minimum essential medium alpha medium (α-MEM), penicillin-streptomycin, and trypsin-EDTA were purchased from GIBCO (Grand Island, NY, USA). Dulbecco's Modified Eagle medium (DMEM) was obtained from Thermo Fisher Scientific (Pittsburgh, PA, USA). Cordycepin, alizarin red S, an Alkaline Phosphatase Assay Kit, and TRAP Staining Kit were purchased from Sigma-Aldrich (St. Louis, MO, USA). RANKL was purchased from R&D systems (Minneapolis, MN, USA). 3-[4,5-dimethylthiazol-2-yl]2,5-diphenyl tetrazolium bromide (MTT) and dimethyl sulfoxide (DMSO) were obtained from DUCHEFA Biochemie (Haarlem, The Netherlands). Mouse antibodies BMP-2, Runx-2, Osterix, Osteopontin, and sRANKL were purchased from Abcam (Cambridge, UK). Antibodies of mouse TRAF6, cFOS, phospho-cFOS, NFATc1, cathepsin K, p38 MAPK, phospho-p38 MAPK, ERK1/2, phospho-ERK1/2, JNK, and phosphor-JNK were provided by Cell Signaling Technology (Beverly, MA, USA). The anti-mouse HRP-conjugated secondary antibody and anti-rabbit HRP-conjugated secondary antibody were purchased from Enzo Biochem (Farmingdale, NY, USA). TOPreal™ qPCR 2X PreMIX and M-MLV cDNA Synthesis Kit were obtained from Enzynomics (Dajeon, KOR). PCR primers (OSCAR, Ctsk1, NFATc1, GADPH) were purchased from Qiagen (Hilden, DEU).
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7

Cytotoxicity Assay and 3D Spheroid Formation

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Briefly, the cells were seeded in 96-well plates (3 × 103 cells/well) and treated with various concentrations of PTX for 72 hours. The cells were incubated with 0.5 mg/mL thiazolyl blue tetrazolium bromide (MTT; Sigma-Aldrich) for 3 hours at 37°C. The medium was discarded and 200 μL of dimethyl sulfoxide (Duchefa Biochemie, Harriem, Netherlands) was added to each well to dissolve the formazan crystals in the cells. The absorbance was measured at 570 nm using a microplate reader (BioTek Instruments, Winooski, USA). For 3D cell culture, cells (5 × 103 cells/well) were suspended and seeded in 24-well plates in growth factor-reduced Matrigel (BD Biosciences, San Jose, USA). Spheroid growth and dimensions were measured as previously described [23 (link)].
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8

MTT Assay for Cell Viability

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Cells (2 × 104 cells/mL) were stabilized overnight on a 96-well plate and treated with WCSC (0, 0.25, 0.5, or 1%) for 24 h. The MTT solution (Sigma-Aldrich, St. Louis, MO, USA) was added to each well and the cells were incubated for 4 h at 37 °C. Then, formazan crystals were dissolved with dimethyl sulfoxide (Duchefa Biochemie, Haarlem, RV, Nederland), and the absorbance was measured at 540 nm using a multimode microplate reader (BioTek, Winooski, VT, USA).
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9

Detailed Analytical Reagents Protocol

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Unless stated otherwise, materials were obtained from the following manufacturers: Duchefa Biochemie (Haarlem, The Netherlands): dimethylsulfoxide (>99.9 atom % D); Ecos-1 (Moscow, Russia): n-hexane (analytical grade), ethyl acetate (analytical grade), methylene chloride (analytical grade); Honeywell (Seelze, Germany): acetonitrile (>99.9%, LC-MS grade). All other chemicals were purchased from Merck KGaA (Darmstadt, Germany). Water was purified in house with a water conditioning and purification system, the GenPure Pro UV-TOC system (resistance 18 mΩ/cm, Thermo Fisher Scientific, Langenselbold, Germany).
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10

Breast Cancer Cell Line Cultures

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TNBC cell lines, MDA-MB-231 (HTB-22), HCC1395 (CRL-2324), and HCC1937 (CRL-2336), with different BRCA1 statuses were purchased from the American Type Culture Collection (Rockville, MD, USA). Cell lines were grown in Roswell Park Memorial Institute 1640 medium (Thermo Fisher Scientific, Waltham, MA, USA) and Dulbecco’s modified Eagle’s medium (Thermo Fisher Scientific) supplemented with 10% fetal bovine serum (FBS) (Thermo Fisher Scientific) and 10,000 U/mL penicillin-streptomycin (Thermo Fisher Scientific). The cell lines were cultured at 37 °C in a 5% carbon dioxide (CO2) incubator. Sub-culturing was performed when the cell confluence reached approximately 85–90% in a 100 mm dish (Corning, New York, NY, USA). Cells were cryopreserved in cell freezing medium containing 90% FBS + 10% dimethyl sulfoxide (Duchefa Biochemie, Amsterdam, The Netherlands).
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