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6 protocols using alexa fluor 488 anti

1

Immunofluorescence Staining of Drosophila

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Antibody staining and DAPI staining (1:1000, Invitrogen/Life Technologies, D1306) were executed using standard procedures. The following antibodies were used: rabbit anti-GFP (1:1000) (Invitrogen, A6455), Alexa Fluor 488 anti-rabbit (1:400) (Invitrogen, A11008), mouse monoclonal antibody directed against Pericardin, EC11 (1:5) (Chartier et al. 2002 (link))(Developmental Studies Hybridoma Bank), Alexa Fluor 568 anti-mouse (1:400) (Invitrogen, A11031).
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2

Immunostaining of Pluripotent and Differentiated Cells

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The cells were plated onto 24-well culture plates before the immunostainings. Cells were fixed with 4% PFA (Fisher Chemical) in PBS for 15 min. The cells were then permeabilized by 0.5% Triton X-100 in PBS for 10 min and treated with Ultravision blocker (Thermo Scientific) for 10 min. Primary antibodies were diluted in 0.1% Tween in PBS, added to the wells, and incubated for 24 h in dark at 4°C on a Stuart SSL4 seesaw rocker. Secondary antibodies, and Hoechst 33342 (Thermo Fisher Scientific) to stain the nuclei, were diluted in 0.1% Tween in PBS and added to the wells. The wells were then incubated in the dark at room temperature (RT) for 30 min on the seesaw rocker.
The primary antibodies used in this study were OCT4 (1:500 goat, Santa Cruz, sc-8628), TRA-1-60 (1:500 mouse, Thermo Fisher Scientific, MA1-023), SSEA (1:1,000 mouse, Millipore, MAB4304), SOX17 (1:500 goat, R&D Systems, AF1924), α-SMA (1:500 mouse, Sigma, A2547), and β-tubulin III (1:500 rabbit, Abcam, Ab18207).
The secondary antibodies used were Alexa Fluor 488 anti-goat (1:500 donkey, Invitrogen, A11055), Alexa Fluor 488 anti-mouse (1:500 donkey, Invitrogen, A21202) and anti-rabbit (1:500 donkey, Invitrogen, A21206), and Alexa Fluor 594 anti-mouse (1:500 donkey, Invitrogen, A21203) and anti-rabbit (1:500 donkey, Invitrogen, A21207).
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3

Immunostaining of Drosophila Tissues

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Antibody staining and DAPI staining (1:1000, Invitrogen/Life Technologies, D1306) were executed using standard procedures. The following antibodies were used: rabbit anti-GFP (1:1000) (Invitrogen, A6455), Alexa Fluor 488 anti-rabbit (1:400) (Invitrogen, A11008), mouse monoclonal antibody directed against Pericardin, EC11 (1:5) (Chartier et al., 2002 (link)) (Developmental Studies Hybridoma Bank), Alexa Fluor 568 anti-mouse (1:400) (Invitrogen, A11031).
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4

Immunostaining of Embryonic Markers

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Embryos were fixed with 4% paraformaldehyde in PBS–0.1% PVA at 4°C overnight. After permeabilization with 0.5% Triton X-100 in PBS–0.1% PVA (PBST–PVA) for 1 h at room temperature, embryos were blocked with 1% BSA in PBST–PVA at 4°C for 6 h. Embryos were incubated with primary anti-NANOG antibody (1:500; Abcam, Cambridge, MA, USA), and anti CDX2 antibody (1:200; BioGenex, Fremont, CA, USA) at 4°C overnight, followed by Alexa Fluor-488 (anti-mouse; Invitrogen) and Alexa Fluor-594 (anti-rabbit; Invitrogen)-labeled secondary antibodies for 1 h at room temperature. Finally, the embryos were counterstained with DAPI.
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5

Immunostaining and Expansion Microscopy

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Punches were blocked in IF buffer (1% BSA; [Sigma-Aldrich; A9647] and 0.05% Tween-20 [Sigma-Aldrich; P9416] in 1× PBS) for 1–2 h at RT, and incubated with primary antibody diluted in IF buffer for 24 h at 4°C. Punches were washed in 1× PBS for 1–2 h and incubated with secondary antibody and DAPI (1:10,000 final dilution; Thermo Fisher Scientific; D1306) in IF buffer for 24 h at 4°C. The following primary antibodies were used for immunostaining: mouse anti-acetylated tubulin (Sigma-Aldrich; T7451) at 1:4,000, rabbit anti-β tubulin (Abcam; ab15568) at 1:250, rabbit anti-ARL13B (Abcam; ab83879) at 1:500, rabbit anti-Cep290 (Abcam; ab84870) at 1:600, and rabbit anti-Cep164 (Proteintech; 22227–1-AP) at 1:500. Secondary antibodies Alexa Fluor 488 anti-mouse (Thermo Fisher Scientific; A11029) and Alexa Fluor 555 anti-rabbit (Thermo Fisher Scientific; A21429) were used at a 1:800 dilution to label primary antibodies for 24 h. After immunostaining, the samples were expanded in deionized H2O for 2 h at RT with deionized H2O exchanged every 10 min and additionally overnight at 4°C. Prior to imaging, expanded punches were mounted in Rose chambers, Attofluor cell chambers, or glass-bottom Microwell dishes (MatTek; P35G-1.5-14-C).
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6

Identification of AHSV Viral Proteins

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For the identification of AHSV VP7 and NS2 proteins, anti-VP7 guinea pig [71 (link)] and anti-NS2 rabbit [27 (link)] sera were available. All sera were preadsorbed with an uninfected BSR cell lysate to remove non-specific binding. VP2 and NS1 were labelled with AHSV4 VP2 and NS1 mouse monoclonal antibodies (Eurofins Technologies Ingenasa, Madrid, Spain). Primary antibodies were diluted 1:100 in 1% blocking solution (1% milk powder in PBS). For detection of labelling, Alexa Fluor 488 anti-guinea pig (green); Alexa Fluor 647 anti-rabbit (red); and Alexa Fluor 594 anti-mouse (red) conjugated antibodies (Thermo Fisher Scientific, Waltham, MA, USA) were used as secondary antibodies at a dilution of 1:250 in 1% blocking solution for LSCM.
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