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5 protocols using af2557

1

Western Blot Analysis of PGRN

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For PGRN protein analysis, supernatants were mixed with equal amount of in 2× sample buffer boiled for 5 min, and resolved on a 10% SDS-PAGE gel. Proteins were transferred onto a nitrocellulose membrane and blocked over-night with membrane blocking agent (GE Healthcare) at 4°C. The blots were incubated in PBST with 1:250 anti-mouse PGRN polyclonal antibody (R&D Systems AF2557) for 1hour followed by extensive washing. After incubating with horseradish peroxidase-conjugated anti-sheep IgG secondary antibody (R&D Systems HAF016; 1:4,000) at room temperature for 1 hour, blots were visualized using enhanced chemiluminescence (GE Healthcare) and a Bio-Rad ChemiDoc MP Image System (Bio-Rad Laboratories, ON Canada). The same blot was stained with mouse monoclonal β-actin antibody (Sigma AC-40; 1:1000), as a control for total protein loading.
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2

Western Blot Analysis of Lysosomal Proteins

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Proteins were resolved by Mini-Protean TGX stain-free gels 4–20% (BioRad 4568093) and transferred to TransBlot Turbo mini-size PVDF membrane (BioRad). Membranes were fixed with 0.4% paraformaldehyde (PFA) then rinsed three times with ultrapure water using the Milli-Q EQ 7000 Ultrapure Water Purification System. The membrane was blocked in 5% powdered milk in 1X tris-buffered saline with Tween-20 (TBS-T), and primary antibodies and secondary antibodies were dissolved in this same buffer. Information on the antibodies used can be found in Table 1. Primary antibodies used were LAMP1 (rabbit, Abcam ab24170) diluted 1:1000, PGRN (sheep, R&D AF2557) diluted 1:400 and Cathepsin B (CTS B)(rabbit, Abcam ab214428) diluted 1:1000. Secondary antibodies Goat anti Rabbit HRP (Jackson Immunoresearch 111-035-144) and Donkey anti-Sheep HRP (Invitrogen A16041) were diluted 1:2000. The membrane was developed using SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo scientific 34577) and SuperSignal West Femto Maximum Sensitivity Substrate (Thermo scientific 34096) and visualized on the Li-cor Odyssey FX system.
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3

Immunofluorescence Staining of Neural Markers

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The frozen sections (n = 3 per group) were first permeabilized using 0.1% Triton X-100 for 10 min followed by blocking with 5% donkey serum in PBS for 30 min. The sections were then incubated with primary antibodies overnight at 4 °C, subsequently rinsed with PBS, and incubated with secondary antibodies at RT for 1 h. After rinsing with PBS for 3 times, the slides were mounted using Vectashield mounting medium with DAPI (H-1200, Vector Laboratories, Burlingame, CA, USA). The slides were subsequently imaged under immunofluorescence microscope (Axio Scope.A1, Zeiss, Oberkochen, Germany).
The primary antibodies used in this study included mouse anti-NeuN (1:400, ab104224, Abcam, Cambridge, England), mouse anti-GFAP (1:100, sc-33673, Santa Cruz Biotechnology), rat anti-CD68 (1:200, MCA1957, Bio-Rad Laboratories, Hercules, USA), sheep anti-PGRN (1:200, AF2557, R&D Systems, Minneapolis, USA), and rabbit anti-iNOS (1:200, PA1-036, Invitrogen, Carlsbad, USA). The secondary antibodies used in this study included donkey anti-mouse Alexa Fluor 488 (1:200, A-11017, Invitrogen, Carlsbad, USA), donkey anti-rat Alexa Fluor 488 (1:200, A-21208, Invitrogen, Carlsbad, USA), donkey anti-rabbit Cy3 (1:200, AP182C, Sigma-Aldrich, Darmstadt, Germany), and donkey anti-sheep Alexa Fluor 647 (1:200, A-21448, Invitrogen, Carlsbad, USA)
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4

Progranulin Quantification in Mouse Cortex

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Mouse cortex samples were lysed in RIPA buffer containing protease inhibitors (Roche, cOmplete Mini EDTA-free Protease Inhibitor Cocktail). Cleared lysates were transferred to new tubes, and protein concentrations were determined using the Bio-Rad DC Protein Assay Kit II. For experiments analyzing secreted progranulin, conditioned media was collected from transfected HeLa cells and cleared at 10,000 x g for 10 min at 4° C. Sample buffer was added to the lysates or conditioned media, and the samples were heated at 95°C for 10 min. Equal amounts of protein lysates (100 μg) or equal volumes of conditioned media (30 μl) were separated on SDS–PAGE gels. Proteins were transferred to nitrocellulose membranes using the Bio-Rad Turbo-Blot transfer system. After blocking and antibody incubations, membranes were incubated with SuperSignal West or SuperSignal Femto chemiluminescent HRP substrate (ThermoFisher) and visualized using a Chemi-Doc system (Bio-Rad). The primary antibodies used for immunoblot analysis include: an anti-mouse progranulin polyclonal antibody (R&D Systems, AF2557, 1:200 dilution) and an anti-α-tubulin monoclonal antibody (Sigma, T9026, 1:2000 dilution). The HRP-conjugated secondary antibodies used were donkey anti-sheep IgG (H+L) (Jackson Immuno Research Labs, 713035147) and donkey anti-mouse IgG (H+L) (Jackson Immuno Research Labs, 715035150).
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5

Fluorescent Immunostaining of Mouse Brain Sections

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After transcardial perfusion of mice with 0.9% saline, brains were sliced into hemibrains and post-fixed for 48 h in 4% paraformaldehyde. Hemibrains were cryoprotected in 30% sucrose and sliced into 30 μm sections on a sliding microtome. Fluorescent immunostaining was conducted as previously described (Arrant et al., 2019 (link)). Brain sections were blocked in 3% BSA prior to overnight incubation with primary antibodies in 3% BSA. The following primary antibodies were used: progranulin (R&D #AF2557, sheep polyclonal, 1:500), Iba1 (Wako #019–19,741, rabbit polyclonal), NeuN (MilliporeSigma #Abn91, chicken polyclonal, 1:1000), and S100β (Abcam #ab52642, rabbit monoclonal, 1:1000). Primary antibodies were then labeled with species-matched Alexa Fluor-conjugated secondary antibodies (ThermoFisher). Progranulin was labeled with Alexa Fluor 488 and cell markers were labeled with Alexa Fluor 594. After incubation with antibodies, all sections were stained with DAPI (ThermoFisher) and then with Sudan Black B (Acros Organics) to quench autofluorescence in the Grn−/− control sections.
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