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62 protocols using ab68477

1

Histological Assessment of Myocardial Infarction

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The hearts were excised and postfixed in 4% paraformaldehyde, embedded in paraffin, and sectioned at 5 μm. Following deparaffinization and dehydration, the sections were stained with hematoxylin and eosin (HE) and observed under a light microscope (ML31, Guangzhou, China). One pathologist was blinded to MIRI grade. Histological analysis of infarct size, hemorrhage, and leukocyte infiltration was scored as none, weak, moderate, strong, or very strong (score 0, 1, 2, 3, or 4) [13 (link)].
Immunohistochemistry (IHC) staining was carried out using the following antibodies: activating transcription factor 3 (Atf3, YT0387, 1:250, Immunoway, Suzhou, China) and heme oxygenase 1 (Hmox1, ab68477, 1:200, Abcam, Cambridge, UK). For the IHC score, three fields from each sample were selected at random, and the mean score of the 3 fields was the final score [13 (link)]. An immunohistochemical assessment was performed by two investigators blinded to treatment assignment.
Immunofluorescent (IF) staining was carried out using the Hmox1 antibody (ab68477, 1:200, Abcam, Cambridge, UK). Images were captured on a confocal laser microscope (Nikon C2+, Tokyo, Japan).
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2

Hepatocyte Protein Expression Analysis

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The homogenate from the liver tissue was collected, and the lysate was used to lyse the hepatocytes for 30 min on ice. The BCA method was used to determine the protein concentration. The sample was added to 5× loading buffer by volume and heated in a water bath at 100 °C for 5 min. The hepatocytes were sonicated by SJIALAB for 2 min (10% ultrasound intensity) and centrifuged for 10 min to obtain the supernatant. The extracted protein was subjected to polyacrylamide gel electrophoresis (80–120 V), transferred to a PVDF membrane, sealed and incubated overnight at 4 °C with the addition of primary antibody of nNOS (3G6B10, Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA), eNOS (9D10, Invitrogen), iNOS (PA1036, Invitrogen), NF-κB (PA1186, Invitrogen), IκB-α (397700, Invitrogen), Mn-SOD (PA530604, Invitrogen), Cu/Zn-SOD (PA5270240, Invitrogen), CAT (PA259183, Invitrogen), HO-1 (ab68477, Abcam, Cambridge, MA, USA), Nrf2 (ab92946, Abcam), γ-GCS (sc-390811, Santa Cruz Biotechnology, Dallas, TX, USA), NQO1 (ab28947, Abcam) and β-action (MA5157739, Invitrogen). The protein was incubated overnight at 37 °C with the addition of a second antibody (A21241) for 2 h, and color detection and chemiluminescence imaging analysis system (Tanon 6200, ShanghaiTanon Technology Co., Ltd., Shanghai, China) were used to collect images [56 (link)].
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3

Protein Secretion in Mesenchymal Stem Cells

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The protein secretion of PI3 kinase p85 (PI3K), phospho-PI3K (p-PI3K), heme oxygenase 1 (HO-1) and indoleamine 2,3-dioxygenase (IDO) in cultured mesenchymal stem cells according to the experimental procedures were detected by western blot assay.
Adherent cells were scraped from the culture dishes, and total protein was extracted from the cell pellet with RIPA lysis buffer (89,900, Thermo Scientific). The proteins were separated through a 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (ISEQ00010, Merck Millipore). The membrane was blocked and probed with primary antibodies overnight, including PI3 kinase p85 (PI3K, ab133595, abcam), phospho-PI3K (p-PI3K, ab182651, abcam), heme oxygenase 1 (HO-1, ab68477, abcam), indoleamine 2,3-dioxygenase (IDO, ab277522, abcam) and β-Actin (ab8226, abcam) at 1:1,000 dilutions. The membrane was then incubated with the secondary antibodies (115-035-003, Jackson). The signals were scanned for the densitometry and the final blots were quantified with ImageJ Version 2.1.0/1.53c software.
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4

Western Blot Analysis of Cellular Proteins

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The antibodies included the following: anti-SQSTM1/p62 (M162-3, Medical Biological Laboratories, Japan), anti-SQSTM1/p62 (ab109012, Abcam, USA), anti-p53 (sc-126, Santa Cruze Biotechnology, USA), anti-p53 (10,442–1-AP, Proteintech, China), anti-mutant p53 (ab32049, Abcam), anti-NRF2 (M200-3, Medical Biological Laboratories), anti-NRF2 (16,396–1-AP, Proteintech), anti-ubiquitin (10,201–2-AP, Proteintech), anti-GAPDH (#5174, Cell Signaling Technology), anti-β-actin (#4970, Cell Signaling Technology), anti-HA (M180-3 and M561, Medical Biological Laboratories), anti-His (D291-3, Medical Biological Laboratories), anti-Flag (M185, Medical Biological Laboratories), anti-Flag (20,543–1-AP, Proteintech), anti-SLC7A11 (NB300-318, Novus, USA), anti-SLC7A11 (26,864–1-AP, Proteintech) anti-HO1 (ab68477, Abcam), anti-HO1 (10,701–1-AP, Proteintech), anti-NQO1 (ab80588, Abcam), anti-Keap1 (10,503–2-AP, Proteintech).
The reagents included the following: Erastin (S7242, Selleck, USA), APR-246 (HY-19980, MCE, USA), Pifithrin-α (HY-15484, MCE), Nutlin-3 (S1061, Selleck).
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5

Quantitative Evaluation of Antioxidant Proteins

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For the protein expression analysis of SOD1, Hmox1 and GCLc proteins, PNS treated INS-1 cells were washed with ice-cold phosphate buffer saline (PBS), collected and lysed using RIPA lysis buffer (P0013C, Beyotime, China) supplemented with a protease inhibitor PMSF (ST506, Beyotime, China) according to manufacturer’s protocol to obtain total protein. Equal amounts of protein lysates were resolved in 10% SDS-PAGE (SK6010-250, Coolaber, China), transferred on the Immobilon-PSQ PVDF blotting membrane (ISEQ00010, Merck) using wet transfer. Membranes were incubated in 5% BSA (ST023-200 g, Beyotime, China) in Tris-buffered saline pH 7.6 containing 0.1% Tween-20 following primary antibody incubation overnight. Antibodies used against SOD1 (dilution: 1:50000, ab51254), Hmox1 (dilution: 1:50000, ab68477), GCLc (dilution: 1:20000, ab190685) were purchased from Abcam. GAPDH (dilution: 1:100000, 60004-1-Ig) was purchased from Protein Tech. Membranes were then washed with TBST and incubated with secondary antibody Anti-Mouse IgG, HRP-linked antibody (A0208, Beyotime, China) and Anti-Rabbit IgG, HRP-linked antibody (A0216, Beyotime, China). Protein detection was performed using ECL western blotting substrate (SL1350, Coolaber) and captured with Amersham Imager 600 (GE Healthcare Life Sciences). Expression of GAPDH was used as a control.
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6

Western Blotting Analysis of Inflammatory and Antioxidant Markers

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The following primary antibodies were employed (dilution): ZO1 (1:1000, ab96587, Abcam, USA), occludin (1:1000, ab167161, Abcam, USA), claudin-1 (1:1000, ab15098, Abcam, USA), IκBα (1:2000, 4812, Cell Signaling Technology, USA), p-IκBα (1:2000, 2859, Cell Signaling Technology, USA), NF-κB p65 (1:1000, ab16502, Abcam, USA), monocyte chemotactic protein-1 (MCP-1, 1:1000, ab7202; Abcam, USA), cyclooxygenase-2 (COX-2, 1:1000, ab62331; Abcam, USA), Keap1 (1:1000, ab139729, Abcam, USA), Nrf2 (1:1000, ab31163, Abcam, USA), heme oxygenase 1 (HO-1, 1:2000, ab68477, Abcam, USA), catalase (1:1000, ab52477, Abcam, USA), NAD(P)H quinone dehydrogenase 1 (NQO1, 1:1000, ab28947, Abcam, USA), α smooth muscle actin (α-SMA, 1:300, ab7817, Abcam, USA), collagen I (1:5000, ab34710, Abcam, USA), and fibronectin (1:1000, ab2413, Abcam, USA). Western blot analysis was performed as previously described24 (link),26 (link),27 (link). Blots were obtained with ECL reagent and protein concentrations were normalized by actin expression. Specific bands indicating target proteins were analyzed using ImageJ 1.48 v software.
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7

Proteomic Analysis of Ovarian Tissues

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Ovarian tissues were homogenized in RIPA buffer (Thermo Scientific, Rockford, IL, USA) and centrifuged at 12,000 × g for 20 min. The protein content of samples was determined using a BCA protein assay kit (Bio-Rad Laboratories, Carlsbad, CA). Aliquots of each sample were separated via 12% SDS-PAGE and then transferred onto a nitrocellulose membrane, which was blocked with non-fat milk for 1 h. The membranes were probed overnight at 4°C with antibodies against the following proteins: HO-1 (ab68477; 1:2000; Abcam); NRF2 (ab92946; 1:3000; Abcam), TNF-α (SAB5700627; 1:1000; Sigma), IL-1β (AB1413-I; 1:4000; Sigma), IL-6 (SAB5700632; 1:2000; Sigma); MVH (ab13840; 1:3000; Abcam); OCT4 (ab184665; 1:2000; Abcam); Ki67 (ab16667; 1:4000; Abcam), PCNA (mAb2586; 1:3000; Cell Signaling Technology), ATM (ab199726; 1:2000; Abcam), RAD51 (ab176458; 1:3000; Abcam), and GAPDH (ab181602; 1:3000; Abcam). After washing with PBST buffer solution three times, the membranes were incubated with appropriate horseradish peroxidase-conjugated secondary antibodies (Beyotime Institute of Biotechnology) for 1 h at 25 °C, and the protein bands were visualized using an enhanced chemiluminescence kit (Thermo Fisher Scientific Inc.). The blots were scanned and normalized to GAPDH for quantification.
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8

Western Blot Analysis of Protein Levels

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RIPA buffer (Applygen, C1053) containing 1% phenylmethanesulfonyl fluoride (PMSF) was used to harvest protein from the treated cells and protein levels were quantified using a BCA kit (Applygen, P1511). Equal amounts of protein (20–30 μg/lane) were then separated on 10% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, IPVH00010 Immobilon-P Transfer Membrane) with a wet transfer system using 300 mA. Blots were blocked with 5% non-fat milk for 1 h at room temperature, followed by overnight incubation with primary antibodies (HO-1, Abcam, ab68477; GPX4, Abcam, ab125066) at 4°C. According to the antibody instructions, the concentration of the HO-1 and GPX4 antibodies diluted at the ratio of 1:10000 and 1:1,000 were 5 ng/ml and 420 ng/ml, respectively. After three washes with Tris-buffered saline containing Tween 20 (TBST), the membranes were incubated with HRP-conjugated secondary antibodies (ProteinTech, sa00001-2) for 1 h at room temperature. After three additional washes in TBST, Super ECL Prime (US EVERBRIGHT, S6008) was used to detect protein bands together with a Bio-Rad (United States) imaging system. ImageJ v1.8.0 (National Institutes of Health) was used for the densitometric analysis of the protein bands.
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9

Profiling Tendon Tissue Protein Expression

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The total protein of peritendinous tissues was isolated using cell lysis buffer (P0013, Beyotime Institute of Biotechnology, China) as per manufacturer’s instructions. Western blotting was performed following the standard protocol [17 (link)]. Antibodies against HO-1 (1:1000 dilution, ab68477, Abcam, UK), Nrf2 (1:1000 dilution, AF0639, Affinity Biosciences, USA), NF-κB (1:1000 dilution, Rabbit mAb #8242, CST, USA), p-NF-κB (Ser536) (1:1000 dilution, Rabbit mAb #3033, CST, USA), and β-Actin (1:2000 dilution, Rabbit mAb #4970, CST, USA) were used for Western blotting.
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10

Oxidative Stress Regulation in TDSCs

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TDSCs were treated with H2O2 or pretreated with PCs for 24 h as for Real-Time PCR. Afterward, TDSCs were washed with PBS, lysed in lysis buffer, and kept on ice for 5 min by Whole Protein Extract Kit (Jiancheng Bioengineering, Nanjing). Cell lysates were centrifuged at 20,000 rpm at 4°C for 5 min, and the supernatants were stored at −80°C until use. Protein concentrations were measured by using a protein assay kit (Jiancheng Bioengineering, Nanjing). Twenty micrograms of total protein were diluted in loading buffer, separated by SDS/PAGE, and electroblotted onto PVDF membranes. The membranes were then blocked with TBS-Tween 20 solution containing 5% nonfat dry milk and incubated overnight at 4°C with specific antibodies against Nrf-2 (1 : 200) (ab31163, Abcam, USA), GCLM (1 : 1000) (ab126704, Abcam, USA), HO-1 (1 : 200) (ab68477, Abcam, USA), and β-actin (ab8226, Abcam, USA). Proteins were visualized using goat anti-rabbit conjugated to HRP and a Chemiluminescence Western Blotting Detection system (34079, Thermo Pierce, USA). Protein band intensities were quantified using the Quantity One software.
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