The largest database of trusted experimental protocols

31 protocols using p erk erk

1

Examining Fibroblast Responses to Injury

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples of the posterior joint capsule collected at 0, 1, 3, 7, and 14 days following injury or primary joint capsule fibroblasts treated with various drugs (MIF, TGF-β1, siRNA or inhibitors) were lysed in RIPA buffer (Beyotime, Shanghai, China) supplemented with 1 mM PMSF (Beyotime). Protein concentration in the supernatant was quantified using the Protein Assay Kit II (Bio-Rad, Inc., California, USA) to ensure equal loading. Western blots were performed as described previously 21 (link). The relative intensities of protein bands were normalized to those of β-actin. The following antibodies were used: β-actin (ProteinTech, Wuhan, China, 1:5000), MIF (Abcam, 1:1000), TGF-β1 (Abcam, 1:1000), α-smooth muscle actin (α-SMA, Abcam, 1:1000), Collagen I (Abcam, 1:1000), CD74 (Santa Cruz, CA, 1:100), p-ERK/ERK (Cell Signaling Technology, Danvers, MA, 1:1000), p-P38/P38 (Cell Signaling Technology, 1:1000), p-JNK/JNK (Cell Signaling Technology, 1:1000). Secondary antibodies included Goat anti-Rabbit IgG (H+L) (DyLight 800 4X PEG) (Invitrogen, 1:20000) and Goat anti-Mouse IgG (H+L) (DyLight 680) (Invitrogen, 1:20000). The fluorescent signals were determined with an Odyssey imaging system (Li-Cor, Lincoln, NE, USA).
+ Open protocol
+ Expand
2

Cardiomyocyte Glucose Metabolism Modulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Glucose and cortisone were purchased from Sigma-Aldrich (Louis, MO). Selective inhibitor of 11β-HSD1 PF-915275 [22 (link)] was purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Epidermal growth factor receptor inhibitor Gefitinib [40 (link)–42 (link)] and GR antagonist Mifepristone [43 (link), 44 (link)] were obtained from Sigma. PF-915275, Gefitinib and Mifepristone were dissolved in DMSO for in vitro studies and in CMC-Na (1%) for in vivo experiments. Antibodies for 11βHSD1, GR, α-myosin heavy chain (α-MyHC) and atrial natriuretic peptide (ANP) were purchased from Santa Cruz Biotechnology. Antibodies for extracellular signal-regulated kinase (p-ERK, ERK) and epidermal growth factor receptor (p-EGFR, EGFR) were obtained from Cell Signaling (Danvers, MA). H9c2 embryonic rat heart-derived cardiomyocyte line was obtained from the Shanghai Institute of Biochemistry and Cell Biology (Shanghai, China). Cells were cultured in DMEM medium containing 5.5 mmol/L of D-glucose supplemented with 10% FBS, 100 U/mL of penicillin, and 100 mg/mL of streptomycin. For high glucose treatments, cells were cultured in DMEM medium containing 25 mmol/L of glucose (high glucose, HG). In the cortisone-treated group, cells were treated with 0.1 μM of cortisone in DMEM media.
+ Open protocol
+ Expand
3

Immunoblotting Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cultured cells were washed and lysed in cell extraction buffer. Equal amounts of extracts were loaded into sodium dodecyl sulfate (SDS) polyacrylamide gels for electrophoresis and transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were blocked in 5% low-fat dry milk for 3 h, and then incubated overnight at 4 °C with primary antibodies against INPP4B, p-SGK3T320, SGK3, p-AKTT308, AKT, p-ERK, ERK (Cell Signaling Technology, MA, USA); p-Ets-1, Ets-1, Flag (Bioworld Technology Inc. MN, USA); NPM1-mA (Abcam, Cambrige, UK) and β-actin (Santa Cruz Biotechnology Inc. CA, USA) as loading control. Membranes were washed in Tris-buffered saline (TBS) (10 mM Tris-HCl pH 8, 150 mM NaCl) containing 0.1% Tween 20, and then incubated with HRP-conjugated secondary antibody for 1 h, and subsequently exposed to enhanced chemiluminescence substrate (Millipore, MA, USA). Membrane blot signals were detected using the Bio-Rad Gel Imaging System on cool image workstation II (Viagene, FL, USA). Quantification of protein expression was normalized against the β-actin protein expression using imaging software.
+ Open protocol
+ Expand
4

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples and cells were homogenized with RIPA lysis buffer (Beyotime Biotech, Shanghai, China). Protein concentrations were determined by using a BCA protein assay kit. The proteins were separated on a 12% SDS‐polyacrylamide gel and transferred to a PVDF membrane. After blocking with 5% bovine serum albumin (BSA) in TBS, the membrane was incubated with primary antibody at 4°C overnight. The secondary antibody was conjugated to horseradish peroxidase and incubated at room temperature for 1 hour. Immunoreactivity was detected with an enhanced chemiluminescence kit (Beyotime Biotech) by a ChemiDoc™ MP System (Bio‐Rad). The following antibodies were used: HMGB1 (1:5000, Abcam), RAGE (1:1000, Abcam), RAGE (1:200, Santa Cruz), TLR4 (1:1000, Protein Tech), TLR4 (1:200, Santa Cruz) and β‐actin (1:1000, Abcam); pNF‐κB/NF‐κB, pJNK/JNK and pERK/ERK were all purchased from Cell Signaling Technology and incubated at a dilution of 1:1000.
+ Open protocol
+ Expand
5

Licochalcone A Modulates Autophagy and Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Licochalcone A (Lico A), purity up to 98%, was provided by the Chengdu Herbpurify CO., LTD (Chengdu, China). Dimethyl sulfoxide (DMSO), d-Galactosamine, LPS (Escherichia coli 055:B5), and inhibitors of autophagy (3-methyladenine, 3-MA) were offered by Sigma-Aldrich (St. Louis, MO, USA). Antibodies against P-AMPK/AMPK, Nrf2, HO-1, and Lamin B were offered by Abcam (Cambridge, MA, USA); and Atg7, Atg16, Beclin1, Atg12, Atg5, Atg3, LC3, NLRP3, ASC, Casapase-1, IL-1β, P-ERK/ERK, P-P38/P38, P-P65/P65, P-IκBα/IκBα, P-JNK/JNK, TFEB, P-P62, and β-actin were obtained from Cell Signaling. Additionally, ALT, AST, MDA, ROS, GSH, and SOD test kits were obtain Nanjing Jiancheng Bioengineering Institute (Nanjing, China). All other reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA), if not otherwise indicated.
+ Open protocol
+ Expand
6

Immunoblotting Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblotting analysis was conducted according to procedures previously described.53 (link) Antibodies against LC3B, caspase-3, PARP, IRE1-α, p-ERK/ERK, p-Akt/Akt, and p-PKA/PKA were purchased from Cell Signaling Technology (Beverly, MA, USA). Anti-β-actin antibody was purchased from Developmental Studies Hybridoma Bank (DSHB, Iowa City, IA, USA). Binding of antibodies was detected using HRP-coupled anti-rabbit or anti-mouse immunoglobulin (Cell Signaling Technology), and visualized using Pierce ECL Western Blotting Substrate (ThermoFisher, Waltham, MA, USA). Density of bands was quantified, and then normalized with β-actin as loading control.
+ Open protocol
+ Expand
7

Bone Marrow Protein Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tibia was thoroughly flushed bone marrow cells with saline. The flushed tibia was homogenized using a handy sonicator and then centrifuged at 12,000 × g for 30 minutes. The supernatant was subsequently assayed for the protein concentration using the DC Protein Assay Kit (BioRad, Hercules, CA). Equal amounts (20 μg) of total protein were subjected to 10% SDS-PAGE and electroblotted onto a PVDF membrane. The membranes were blocked in 2% blocking reagent (ECL Advance Blocking Agent, GE Healthcare) and probed with antibodies against Cx43 (1:1,000; Cell signaling), RANKL (1:1,000; abcam), SOD2 (1:2,000; SOD-110; StressGen), Sclerostin (1:500; abcam), p-ERK, ERK (1:1,000; Cell signaling), GAPDH (1:1,000; Cell signaling) and ACTIN (1:2,000; Cell signaling). The signals were detected using the ECL system (ECL plus, GE Healthcare) and a luminoimage analyzer LAS-3000 mini (Fuji Film, Tokyo, Japan).
+ Open protocol
+ Expand
8

Molecular Mechanisms in Neuroprotection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phosphate-buffered saline (PBS) was purchased from Bio Basic Inc. (Markham, Ontario, Canada). 2,3,5-Triphenyl-tetrazolium chloride (TTC), cresyl violet, Evans blue (EB), and propidium iodide (PI) were obtained from Sigma-Aldrich Co. (St. Louis, MO, USA). The optimal cutting temperature compound cryostat embedding medium was obtained from Thermo Fisher Scientific (Waltham, MA, USA). Primary antibodies against B-cell lymphoma 2 (Bcl-2), bcl-2-like protein 4 (Bax), phospho-phosphoinositide 3-kinase (p-PI3K), protein kinase B (PKB, AKT), phospho-extracellular signal-regulated kinase (p-ERK), ERK, phospho-c-Jun N-terminal kinase (p-JNK), JNK, phospho-p38 mitogen-activated protein kinase (p-p38), p38, and manganese superoxide dismutase (MnSOD) were purchased from Cell Signalling Technology (Danvers, MA, USA). PI3K, p-AKT, phospho-mammalian target of rapamycin (p-mTOR), sirtuin 1 (SIRT1), and β-actin were obtained from Santa Cruz Biotechnology Inc. (Dallas, TX, USA). Aquaporin 4 (AQP4) was purchased from Abcam Inc. (Milton, Cambridge, UK). The bovine serum albumin (BSA) standard and enhanced chemiluminescence (ECL) western blotting chemiluminescent substrate were purchased from Thermo Fisher Scientific.
+ Open protocol
+ Expand
9

Macrophage Activation Signaling Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human embryonic kidney 293E (HEK293E) cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM, Invitrogen, Carlsbad, CA, USA) supplemented with antibiotics and 5% fetal bovine serum (FBS, Invitrogen) in the presence of M-CSF. RAW264.7 cell, a murine macrophage cell line, was cultured in DMEM supplemented with antibiotics and 10% FBS in the absence of M-CSF. Antibodies used in this study were as follows: His antibody from Roche; NFATc1, c-Fos, ATP6V0D2, actin, p-Akt, and Akt antibodies from Santa Cruz Biotechnology (Santa Cruz, CA, USA); M-CSF antibody from Abcam; and p-ERK, ERK, p-JNK, JNK, p-p38, and p38 antibodies from Cell Signaling Technology (Boston, MA, USA).
+ Open protocol
+ Expand
10

Elucidating Mechanistic Insights of 29-kDa FN-f

Check if the same lab product or an alternative is used in the 5 most similar protocols
29-kDa amino-terminal fibronectin fragment (29-kDa FN-f) from human plasma, U73122 (a phosphoinositide-specific phospholipase C (PLC)-γ-specific inhibitor), SP600125 (c-Jun N-terminal kinase (JNK) inhibitor), PD98059 (extracellular signal-regulated kinase (ERK) inhibitor), SB203580 (p38 inhibitor), Bay 11-7082 (nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) inhibitor), 2‐bis(o‐aminophenoxy)ethane‐N,N,N′,N′‐tetraacetic acid acetoxymethyl ester (BAPTA, a permeable Ca2+ chelator), thapsigargin (TG, an inhibitor of ER Ca2+-ATPase), and an antibody against β-actin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against TonEBP and lamin-B1 were obtained from Abcam (Cambridge, UK), and antibodies against p-nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor alpha (Iκ-Bα)/Iκ-Bα, p-p38/p38, p-ERK/ERK, p-JNK/JNK, and p-protein kinase C (PKC)/PKC were purchased from Cell Signaling Technology (Danvers, MA, USA). Horseradish peroxidase (HRP)-conjugated secondary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Small interfering RNAs (siRNAs) against TonEBP and TLR-2 were purchased from Bioneer (Daejeon, South Korea). Antibodies against MMPs 1, 3, and 13 were obtained from R&D Systems (Minneapolis, MN, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!